RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA703759" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA703759 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27619976 27619976 PRJNA703759_P_NODE_23444_length_291_cov_1.422018_g22968_i0 PRJNA703759 23444 291 1.422018 4.13807238 Mollicutes bacterium 37628 Bacteria Bacteria 46.6 0.00267   NR HHU55045.1 37628 g22968 i0 33.3 1.23711340206186 60 40 61.9 0 288 109 233 292 HHU55045.1 hypothetical protein [Mollicutes bacterium] diamond 360 46.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium
30619879 30619879 PRJNA703759_P_NODE_50433_length_242_cov_0.923077_g49957_i0 PRJNA703759 50433 242 0.923077 2.23384634 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 149 4.06e-44   NR WP_340499141.1 2754999 g49957 i0 81.3 0.991735537190083 80 15 99.2 0 2 241 30 109 WP_340499141.1 phage major tail tube protein, partial [Candidatus Phytoplasma australasiaticum] diamond 240 149 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
31726254 31726254 PRJNA703759_P_NODE_39577_length_250_cov_0.875706_g39101_i0 PRJNA703759 39577 250 0.875706 2.189265 Haloplasmataceae bacterium 2862752 Bacteria Bacteria 51.2 3.86e-5   NR MDF2698533.1 2862752 g39101 i0 33.3 0.9 75 49 90 1 243 19 160 233 MDF2698533.1 Ankyrin [Haloplasmataceae bacterium] diamond 225 51.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Haloplasmatales Haloplasmataceae   Haloplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;