RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA703759" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA703759 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22361379 22361379 PRJNA703759_P_NODE_21138_length_303_cov_1.356522_g20662_i0 PRJNA703759 21138 303 1.356522 4.11026166 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 88.2 3.29e-20   NR MCU0666917.1 2035772 g20662 i0 73.5 6.42574257425743 49 13 48.5 0 151 5 1 49 MCU0666917.1 thioredoxin [Candidatus Omnitrophota bacterium] diamond 1947 88.2 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27631184 27631184 PRJNA703759_P_NODE_9804_length_432_cov_1.571031_g9328_i0 PRJNA703759 9804 432 1.571031 6.78685392 Bacteria 2 Bacteria Bacteria 141 2.72e-40   NR MBU0534483.1 2035772 g9328 i0 69.1 11.1805555555556 94 29 65.3 0 3 284 25 118 MBU0534483.1 sulfite exporter TauE/SafE family protein [Candidatus Omnitrophota bacterium] diamond 4830 141 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31410097 31410097 PRJNA703759_P_NODE_47536_length_244_cov_0.912281_g47060_i0 PRJNA703759 47536 244 0.912281 2.22596564 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 76.6 4.22e-14   NR MBF0254534.1 2035772 g47060 i0 57.4 0.836065573770492 68 29 83.6 0 24 227 172 239 MBF0254534.1 YfhO family protein [Candidatus Omnitrophota bacterium] diamond 204 76.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;