contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA702290" and tax_kingdom = "Bacillati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23636666 | 23636666 | PRJNA702290_P_NODE_1379_length_175_cov_9.573529_g1371_i0 | PRJNA702290 | 1379 | 175 | 9.573529 | 16.75367575 | Lawsonella | 1847725 | Bacteria | Bacteria | 110 | 2.17e-27 | NR | WP_290595264.1 | 1847725 | g1371 | i0 | 100 | 0.96 | 56 | 0 | 96 | 0 | 8 | 175 | 197 | 252 | WP_290595264.1 MULTISPECIES: type I glyceraldehyde-3-phosphate dehydrogenase [Lawsonella] | diamond | 168 | 110 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Lawsonellaceae | Lawsonella | |||
| 27903811 | 27903811 | PRJNA702290_P_NODE_1505_length_159_cov_44.408333_g1497_i0 | PRJNA702290 | 1505 | 159 | 44.408333 | 70.60924947 | Actinomycetota bacterium | 2900548 | Bacteria | Bacteria | 55.1 | 5.39e-7 | NR | MEN9962630.1 | 2900548 | g1497 | i0 | 100 | 0.471698113207547 | 25 | 0 | 47.2 | 0 | 7 | 81 | 90 | 114 | MEN9962630.1 hypothetical protein [Actinomycetota bacterium] | diamond | 75 | 55.1 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetota bacterium | ||||||
| 28282704 | 28282704 | PRJNA702290_P_NODE_2006_length_153_cov_28.385965_g1998_i0 | PRJNA702290 | 2006 | 153 | 28.385965 | 43.43052645 | Lawsonella clevelandensis | 1528099 | Bacteria | Bacteria | 99.4 | 8.809999999999999e-23 | NR | WP_304161253.1 | 1528099 | g1998 | i0 | 97.9 | 0.941176470588235 | 48 | 1 | 94.1 | 0 | 145 | 2 | 177 | 224 | WP_304161253.1 purple acid phosphatase family protein [Lawsonella clevelandensis] | diamond | 144 | 99.4 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Lawsonellaceae | Lawsonella | Lawsonella clevelandensis | ||
| 28914163 | 28914163 | PRJNA702290_P_NODE_2108_length_151_cov_7.464286_g2100_i0 | PRJNA702290 | 2108 | 151 | 7.464286 | 11.27107186 | uncultured Cellulomonas sp. | 189682 | Bacteria | Bacteria | 79.7 | 2.06e-16 | NR | WP_315095514.1 | 189682 | g2100 | i0 | 81.5 | 2.08609271523179 | 54 | 6 | 99.3 | 1 | 1 | 150 | 16 | 69 | WP_315095514.1 helix-turn-helix transcriptional regulator [uncultured Cellulomonas sp.] | diamond | 315 | 79.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Cellulomonadaceae | Cellulomonas | uncultured Cellulomonas sp. | ||
| 28977697 | 28977697 | PRJNA702290_P_NODE_1708_length_158_cov_6.327731_g1700_i0 | PRJNA702290 | 1708 | 158 | 6.327731 | 9.99781498 | Leucobacter manosquensis | 2810611 | Bacteria | Bacteria | 50.8 | 1.09e-5 | NR | WP_211648413.1 | 2810611 | g1700 | i0 | 64.4 | 0.854430379746835 | 45 | 11 | 75.9 | 1 | 8 | 127 | 163 | 207 | WP_211648413.1 hypothetical protein [Leucobacter manosquensis] | diamond | 135 | 50.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Leucobacter | Leucobacter manosquensis | ||
| 30809484 | 30809484 | PRJNA702290_P_NODE_1314_length_187_cov_1.250000_g1306_i0 | PRJNA702290 | 1314 | 187 | 1.25 | 2.3375 | Brachybacterium fresconis | 173363 | Bacteria | Bacteria | 43.5 | 6.66e-4 | NR | GAA1487249.1 | 173363 | g1306 | i0 | 57.1 | 0.561497326203209 | 35 | 15 | 56.1 | 0 | 115 | 11 | 2 | 36 | GAA1487249.1 hypothetical protein GCM10009625_40540 [Brachybacterium fresconis] | diamond | 105 | 43.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Dermabacteraceae | Brachybacterium | Brachybacterium fresconis | ||
| 30852178 | 30852178 | PRJNA702290_P_NODE_1134_length_191_cov_4.730263_g1126_i0 | PRJNA702290 | 1134 | 191 | 4.730263 | 9.03480233 | Lawsonella | 1847725 | Bacteria | Bacteria | 77 | 1.17e-15 | NR | PZP88504.1 | 1528099 | g1126 | i0 | 78.2 | 2.59162303664921 | 55 | 11 | 86.4 | 1 | 189 | 25 | 96 | 149 | PZP88504.1 MAG: nucleotide exchange factor GrpE [Lawsonella clevelandensis] | diamond | 495 | 77 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Lawsonellaceae | Lawsonella | Lawsonella clevelandensis | ||
| 31726224 | 31726224 | PRJNA702290_P_NODE_777_length_191_cov_13.328947_g769_i0 | PRJNA702290 | 777 | 191 | 13.328947 | 25.45828877 | Arthrobacter sp. NPDC | 1667 | Bacteria | Bacteria | 48.1 | 2.22e-4 | NR | WP_400484826.1 | 3363943 | g769 | i0 | 95.8 | 0.37696335078534 | 24 | 1 | 37.7 | 0 | 112 | 183 | 115 | 138 | WP_400484826.1 C40 family peptidase [Arthrobacter sp. NPDC092385] | diamond | 72 | 48.1 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Arthrobacter | Arthrobacter sp. NPDC092385 | ||
| 32105913 | 32105913 | PRJNA702290_P_NODE_958_length_191_cov_9.151316_g950_i0 | PRJNA702290 | 958 | 191 | 9.151316 | 17.47901356 | Actinomyces oris | 544580 | Bacteria | Bacteria | 64.7 | 1.82e-10 | NR | WP_314179067.1 | 544580 | g950 | i0 | 48.3 | 0.942408376963351 | 60 | 27 | 94.2 | 1 | 185 | 6 | 64 | 119 | WP_314179067.1 DUF4145 domain-containing protein [Actinomyces oris] | diamond | 180 | 64.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Actinomycetales | Actinomycetaceae | Actinomyces | Actinomyces oris | ||
| 32685928 | 32685928 | PRJNA702290_P_NODE_1160_length_191_cov_4.131579_g1152_i0 | PRJNA702290 | 1160 | 191 | 4.131579 | 7.8913158900000004 | Bacteria | 2 | Bacteria | Bacteria | 85.5 | 8.6e-20 | NR | WP_414057742.1 | 1280 | g1152 | i0 | 72.1 | 3.83246073298429 | 61 | 10 | 95.8 | 1 | 185 | 3 | 49 | 102 | WP_414057742.1 Dps family protein, partial [Staphylococcus aureus] | diamond | 732 | 85.5 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;