RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA700095" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA700095 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22861655 22861655 PRJNA700095_P_NODE_21038_length_383_cov_1.393548_g19774_i0 PRJNA700095 21038 383 1.393548 5.33728884 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 91.7 3.57e-21   NR NMA06015.1 1898209 g19774 i0 67.2 3.07832898172324 61 20 47.8 0 184 2 10 70 NMA06015.1 thioredoxin [Acholeplasmataceae bacterium] diamond 1179 91.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
27820615 27820615 PRJNA700095_P_NODE_56884_length_247_cov_0.879310_g55620_i0 PRJNA700095 56884 247 0.87931 2.1718957 root 1 Root_unresolved Root_unresolved 112 2.25e-27   NR WP_026389368.1 264638 g55620 i0 64.2 9.43724696356275 81 29 98.4 0 243 1 132 212 WP_026389368.1 agmatine deiminase [[Acholeplasma] multilocale] diamond 2331 113 0.991150442477876 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Entomoplasma [Acholeplasma] multilocale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;