RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA700095" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA700095 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22360357 22360357 PRJNA700095_P_NODE_32318_length_300_cov_2.008811_g31054_i0 PRJNA700095 32318 300 2.008811 6.026433 Minisyncoccota bacterium 2053589 Bacteria Bacteria 77.8 3.29e-14   NR MDR3572160.1 2053589 g31054 i0 45.4 5.89 97 45 95 2 299 15 278 368 MDR3572160.1 ABC-F family ATP-binding cassette domain-containing protein [Candidatus Paceibacterota bacterium] diamond 1767 77.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30272598 30272598 PRJNA700095_P_NODE_10072_length_613_cov_3.855556_g8841_i0 PRJNA700095 10072 613 3.855556 23.63455828 Minisyncoccota bacterium 2053589 Bacteria Bacteria 55.8 7.31e-6   NR MCK5285907.1 2053589 g8841 i0 36 2.16802610114192 86 47 41.1 2 357 608 39 118 MCK5285907.1 50S ribosomal protein L6 [Candidatus Paceibacterota bacterium] diamond 1329 55.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;