RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA700095" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA700095 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30841102 30841102 PRJNA700095_P_NODE_56794_length_247_cov_0.879310_g55530_i0 PRJNA700095 56794 247 0.87931 2.1718957 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 85.5 1.25e-18   NR CEP00175.1 37360 g55530 i0 56.4 0.947368421052632 78 34 94.7 0 14 247 23 100 CEP00175.1 hypothetical protein PBRA_007909 [Plasmodiophora brassicae] diamond 234 85.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32717575 32717575 PRJNA700095_P_NODE_25360_length_341_cov_1.828358_g24096_i0 PRJNA700095 25360 341 1.828358 6.23470078 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 79 1.77e-14   NR CEP00625.1 37360 g24096 i0 50.6 2.66568914956012 89 43 78.3 1 64 330 19 106 CEP00625.1 hypothetical protein PBRA_001678 [Plasmodiophora brassicae] diamond 909 79.3 0.996216897856242 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;