RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where analysis = "diamond", bioproject = "PRJNA700095" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA700095 · 23 ✖

analysis 1

  • diamond · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26639562 26639562 PRJNA700095_P_NODE_29121_length_315_cov_1.479339_g27857_i0 PRJNA700095 29121 315 1.479339 4.65991785 Branchiostoma lanceolatum 7740 Chordata Chordata 71.2 8.54e-12   NR XP_066300029.1 7740 g27857 i0 42.5 0.828571428571429 87 39 73.3 3 1 231 441 526 XP_066300029.1 tyrosinase-like [Branchiostoma lanceolatum] diamond 261 71.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
26777620 26777620 PRJNA700095_P_NODE_51361_length_251_cov_0.865169_g50097_i0 PRJNA700095 51361 251 0.865169 2.17157419 Chordata 7711 Chordata Chordata 152 6.4e-44   NR XP_064408421.1 7897 g50097 i0 97.6 752.95219123506 83 2 99.2 0 249 1 123 205 XP_064408421.1 nascent polypeptide-associated complex subunit alpha isoform X5 [Latimeria chalumnae] diamond 188991 152 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
26797893 26797893 PRJNA700095_P_NODE_20841_length_385_cov_2.477564_g19577_i0 PRJNA700095 20841 385 2.477564 9.5386214 Staurois parvus 386267 Chordata Chordata 53.5 3.57e-6   NR CAI9557087.1 386267 g19577 i0 63.9 0.561038961038961 36 11 26.5 1 163 62 24 59 CAI9557087.1 unnamed protein product, partial [Staurois parvus] diamond 216 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27398940 27398940 PRJNA700095_P_NODE_54763_length_248_cov_1.354286_g53499_i0 PRJNA700095 54763 248 1.354286 3.35862928 Rostratula benghalensis 118793 Chordata Chordata 43.1 0.0297   NR NXJ71424.1 118793 g53499 i0 35 0.725806451612903 60 37 72.6 1 16 195 726 783 NXJ71424.1 Z804B protein [Rostratula benghalensis] diamond 180 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Rostratulidae Rostratula Rostratula benghalensis
27441828 27441828 PRJNA700095_P_NODE_48803_length_256_cov_1.262295_g47539_i0 PRJNA700095 48803 256 1.262295 3.2314752 root 1 Root_unresolved Root_unresolved 104 5.48e-24   NR XP_042197619.1 7868 g47539 i0 55.3 27.41015625 85 36 99.6 1 256 2 264 346 XP_042197619.1 copine-3 isoform X1 [Callorhinchus milii] diamond 7017 105 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
27462117 27462117 PRJNA700095_P_NODE_21823_length_374_cov_1.780731_g20559_i0 PRJNA700095 21823 374 1.780731 6.65993394 Polypterus senegalus 55291 Chordata Chordata 43.5 0.0286   NR KAG2471189.1 55291 g20559 i0 57.1 0.280748663101604 35 15 28.1 0 174 278 92 126 KAG2471189.1 TCB1 transposase, partial [Polypterus senegalus] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28072967 28072967 PRJNA700095_P_NODE_40585_length_274_cov_1.885572_g39321_i0 PRJNA700095 40585 274 1.885572 5.16646728 Squamata 8509 Chordata Chordata 55.1 2.41e-6   NR ETE61160.1 8665 g39321 i0 39.4 22.7408759124088 99 43 98.5 4 5 274 191 281 ETE61160.1 Pleckstrin-likey domain-containing family A member 1, partial [Ophiophagus hannah] diamond 6231 55.5 0.992792792792793 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
28125009 28125009 PRJNA700095_P_NODE_10825_length_587_cov_7.813230_g9585_i0 PRJNA700095 10825 587 7.81323 45.8636601 Gekko japonicus 146911 Chordata Chordata 124 5.06e-29   NR XP_015284848.1 146911 g9585 i0 57.3 0.981260647359455 96 41 49.1 0 359 72 14 109 XP_015284848.1 PREDICTED: thioredoxin reductase 3 isoform X1 [Gekko japonicus] diamond 576 124 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
28219479 28219479 PRJNA700095_P_NODE_13866_length_503_cov_3.644186_g12607_i0 PRJNA700095 13866 503 3.644186 18.33025558 Balaenoptera physalus 9770 Chordata Chordata 50.1 2.04e-4   NR KAB0401909.1 9770 g12607 i0 37.6 0.554671968190855 93 53 53.7 3 186 455 13 103 KAB0401909.1 hypothetical protein E2I00_017869, partial [Balaenoptera physalus] diamond 279 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
28693576 28693576 PRJNA700095_P_NODE_68347_length_230_cov_2.898089_g67082_i0 PRJNA700095 68347 230 2.898089 6.6656047 Galeopterus variegatus 482537 Chordata Chordata 46.6 0.00112   NR XP_008566368.1 482537 g67082 i0 62.9 0.456521739130435 35 13 45.7 0 19 123 1 35 XP_008566368.1 PREDICTED: apolipoprotein D-like [Galeopterus variegatus] diamond 105 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dermoptera Cynocephalidae Galeopterus Galeopterus variegatus
28851003 28851003 PRJNA700095_P_NODE_28288_length_320_cov_2.165992_g27024_i0 PRJNA700095 28288 320 2.165992 6.9311744 Phallusia mammillata 59560 Chordata Chordata 45.1 0.0137   NR CAB3266418.1 59560 g27024 i0 35.6 1.640625 59 36 55.3 1 193 17 456 512 CAB3266418.1 SET and MYND domain-containing protein 4-like [Phallusia mammillata] diamond 525 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
28977649 28977649 PRJNA700095_P_NODE_10968_length_583_cov_1.968627_g9727_i0 PRJNA700095 10968 583 1.968627 11.47709541 Polypterus senegalus 55291 Chordata Chordata 62.8 1.16e-7   NR XP_039593442.1 55291 g9727 i0 29.7 0.936535162950257 182 106 92.1 5 4 540 432 594 XP_039593442.1 syndetin isoform X3 [Polypterus senegalus] diamond 546 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29083522 29083522 PRJNA700095_P_NODE_19888_length_396_cov_3.894737_g18625_i0 PRJNA700095 19888 396 3.894737 15.42315852 Opisthokonta 33154 Chordata Chordata 119 2.91e-30   NR XP_008120216.2 28377 g18625 i0 54.4 10.219696969697 125 48 94.7 4 392 18 153 268 XP_008120216.2 sepiapterin reductase isoform X2 [Anolis carolinensis] diamond 4047 120 0.991666666666667 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis carolinensis
29083523 29083523 PRJNA700095_P_NODE_24488_length_348_cov_1.938182_g23224_i0 PRJNA700095 24488 348 1.938182 6.74487336 Metazoa 33208 Chordata Chordata 73.2 2.57e-12   NR NP_001071903.1 7719 g23224 i0 38.5 5.10344827586207 96 54 81 3 11 292 140 232 NP_001071903.1 zinc finger protein [Ciona intestinalis] diamond 1776 73.9 0.990527740189445 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29556871 29556871 PRJNA700095_P_NODE_3350_length_1069_cov_1.994980_g2559_i0 PRJNA700095 3350 1069 1.99498 21.3263362 Opisthokonta 33154 Chordata Chordata 86.3 3.07e-14   NR NP_001400500.1 10090 g2559 i0 28 3.03367633302152 239 136 65.1 6 232 927 433 642 NP_001400500.1 SWI/SNF complex subunit SMARCC1 isoform 4 [Mus musculus] diamond 3243 86.7 0.995386389850058 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29703329 29703329 PRJNA700095_P_NODE_47350_length_259_cov_1.241935_g46086_i0 PRJNA700095 47350 259 1.241935 3.21661165 Calypte anna 9244 Chordata Chordata 42.7 0.0349   NR KFP00376.1 9244 g46086 i0 43.2 0.857142857142857 37 21 42.9 0 148 258 5 41 KFP00376.1 TPR and ankyrin repeat-containing protein 1, partial [Calypte anna] diamond 222 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Trochilidae Calypte Calypte anna
29956362 29956362 PRJNA700095_P_NODE_32531_length_299_cov_1.938053_g31267_i0 PRJNA700095 32531 299 1.938053 5.79477847 Protopterus annectens 7888 Chordata Chordata 63.2 4e-9   NR XP_043912117.1 7888 g31267 i0 45.2 0.732441471571906 73 40 73.2 0 299 81 245 317 XP_043912117.1 fibronectin type 3 and ankyrin repeat domains protein 1 isoform X2 [Protopterus annectens] diamond 219 63.2 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
29967625 29967625 PRJNA700095_P_NODE_50291_length_252_cov_4.497207_g49027_i0 PRJNA700095 50291 252 4.497207 11.33296164 Chordata 7711 Chordata Chordata 50.8 5.89e-5   NR XP_042326313.1 8520 g49027 i0 77.3 2.0952380952381 22 5 26.2 0 1 66 514 535 XP_042326313.1 src substrate cortactin-like isoform X2 [Sceloporus undulatus] diamond 528 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Sceloporus Sceloporus undulatus
30051022 30051022 PRJNA700095_P_NODE_36231_length_286_cov_0.948357_g34967_i0 PRJNA700095 36231 286 0.948357 2.71230102 Tinamus guttatus 94827 Chordata Chordata 97.4 3.42e-21   NR XP_010212325.1 94827 g34967 i0 58.5 0.986013986013986 94 33 98.6 2 3 284 284 371 XP_010212325.1 PREDICTED: uncharacterized protein LOC104567219, partial [Tinamus guttatus] diamond 282 97.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
31441543 31441543 PRJNA700095_P_NODE_33496_length_295_cov_1.040541_g32232_i0 PRJNA700095 33496 295 1.040541 3.06959595 Gavialis gangeticus 94835 Chordata Chordata 58.9 1.38e-7   NR XP_019373327.1 94835 g32232 i0 34 3.82372881355932 94 38 95.6 2 1 282 33 102 XP_019373327.1 PREDICTED: E3 ubiquitin-protein ligase TRIM23 isoform X2 [Gavialis gangeticus] diamond 1128 58.9 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Gavialidae Gavialis Gavialis gangeticus
31769017 31769017 PRJNA700095_P_NODE_20957_length_384_cov_1.717042_g19693_i0 PRJNA700095 20957 384 1.717042 6.59344128 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 117 1.35e-27   NR XP_070742255.1 55135 g19693 i0 57.3 12.625 96 41 75 0 94 381 460 555 XP_070742255.1 ubiquitin-like modifier-activating enzyme 6 [Pristiophorus japonicus] diamond 4848 118 0.991525423728814 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
31821021 31821021 PRJNA700095_P_NODE_48177_length_257_cov_1.657609_g46913_i0 PRJNA700095 48177 257 1.657609 4.26005513 Mycteria americana 33587 Chordata Chordata 43.9 0.00831   NR KAK4820545.1 33587 g46913 i0 36.8 0.665369649805447 57 34 64.2 1 226 62 86 142 KAK4820545.1 hypothetical protein QYF61_000695 [Mycteria americana] diamond 171 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
31990460 31990460 PRJNA700095_P_NODE_41798_length_271_cov_1.858586_g40534_i0 PRJNA700095 41798 271 1.858586 5.03676806 root 1 Root_unresolved Root_unresolved 55.8 2.12e-7   NR XP_030620105.1 9749 g40534 i0 66.7 1.39483394833948 42 14 46.5 0 1 126 47 88 XP_030620105.1 LINE-1 type transposase domain-containing protein 1, partial [Delphinapterus leucas] diamond 378 56.2 0.99288256227758 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Delphinapterus Delphinapterus leucas

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;