RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA700095" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA700095 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30240759 30240759 PRJNA700095_P_NODE_26152_length_335_cov_2.637405_g24888_i0 PRJNA700095 26152 335 2.6374050000000002 8.83530675 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 70.9 1.07e-13   NR MBX9703359.1 2654442 g24888 i0 64.3 0.376119402985075 42 15 37.6 0 293 168 1 42 MBX9703359.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 126 70.9 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
30335923 30335923 PRJNA700095_P_NODE_4512_length_928_cov_17.304094_g3582_i0 PRJNA700095 4512 928 17.304094 160.58199232 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 375 4.78e-129   NR MBX9767865.1 2053517 g3582 i0 90.5 0.649784482758621 201 19 65 0 261 863 1 201 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 603 375 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30462310 30462310 PRJNA700095_P_NODE_14893_length_480_cov_3.137592_g13632_i0 PRJNA700095 14893 480 3.137592 15.0604416 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 140 1.69e-39   NR MEO5970318.1 3034169 g13632 i0 57.8 3.15625 128 48 79.4 2 381 1 2 124 MEO5970318.1 hotdog fold thioesterase [Bdellovibrionia bacterium] diamond 1515 140 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
30493574 30493574 PRJNA700095_P_NODE_58893_length_245_cov_1.691860_g57629_i0 PRJNA700095 58893 245 1.69186 4.145057 Bdellovibrio sp. GT3 3136282 Bacteria Bacteria 42.4 0.0495   NR WP_340596188.1 3136282 g57629 i0 37.9 0.710204081632653 58 36 71 0 6 179 75 132 WP_340596188.1 hypothetical protein [Bdellovibrio sp. GT3] diamond 174 42.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. GT3
30651210 30651210 PRJNA700095_P_NODE_8173_length_692_cov_4.179321_g7006_i0 PRJNA700095 8173 692 4.179321 28.92090132 Pigmentibacter ruber 2683196 Bacteria Bacteria 90.5 1.37e-19   NR WP_158998151.1 2683196 g7006 i0 52.4 1.4393063583815 84 40 36.4 0 208 459 2 85 WP_158998151.1 30S ribosomal protein S15 [Pigmentibacter ruber] diamond 996 90.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Pigmentibacter Pigmentibacter ruber
30915568 30915568 PRJNA700095_P_NODE_49494_length_254_cov_1.801105_g48230_i0 PRJNA700095 49494 254 1.801105 4.5748067 Bdellovibrio 958 Bacteria Bacteria 64.7 4.36e-11   NR WP_246845325.1 2220073 g48230 i0 44.6 7.88976377952756 56 31 66.1 0 253 86 65 120 WP_246845325.1 DOPA 4,5-dioxygenase family protein [Bdellovibrio sp. NC01] diamond 2004 65.1 0.993855606758833 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01
32528653 32528653 PRJNA700095_P_NODE_15139_length_475_cov_3.256219_g13878_i0 PRJNA700095 15139 475 3.256219 15.46704025 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 78.6 1.48e-13   NR MBC77950.1 2026745 g13878 i0 40.4 7.95789473684211 99 40 62.5 2 174 470 808 887 MBC77950.1 hypothetical protein [Halobacteriovoraceae bacterium] diamond 3780 78.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
32863804 32863804 PRJNA700095_P_NODE_16940_length_440_cov_2.264305_g15677_i0 PRJNA700095 16940 440 2.264305 9.962942 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 213 1.4e-66   NR MBX9767866.1 2053517 g15677 i0 71.4 1.00227272727273 147 41 99.5 1 3 440 2 148 MBX9767866.1 GTP-binding protein [Bdellovibrionales bacterium] diamond 441 213 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;