RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA700095" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA700095 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28630444 28630444 PRJNA700095_P_NODE_57467_length_246_cov_1.745665_g56203_i0 PRJNA700095 57467 246 1.745665 4.2943359 Pinus nigra virus 1 2267679 Viruses Viruses 150 7.089999999999999e-40   NR AXB54821.1 2267679 g56203 i0 87.7 0.98780487804878 81 10 98.8 0 2 244 1543 1623 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 243 150 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
28661890 28661890 PRJNA700095_P_NODE_30187_length_310_cov_2.704641_g28923_i0 PRJNA700095 30187 310 2.704641 8.3843871 Pinus nigra virus 1 2267679 Viruses Viruses 74.3 6.99e-13   NR AXB54821.1 2267679 g28923 i0 70.5 0.425806451612903 44 13 42.6 0 166 297 1181 1224 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 132 74.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
32454221 32454221 PRJNA700095_P_NODE_55139_length_248_cov_0.880000_g53875_i0 PRJNA700095 55139 248 0.88 2.1824 Pinus nigra virus 1 2267679 Viruses Viruses 88.6 3e-18   NR AXB54821.1 2267679 g53875 i0 58.5 0.991935483870968 82 34 99.2 0 247 2 1097 1178 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 246 88.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;