RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA700095" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA700095 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28535639 28535639 PRJNA700095_P_NODE_15527_length_467_cov_2.185279_g14266_i0 PRJNA700095 15527 467 2.185279 10.20525293 SAR324 cluster bacterium 2024889 Bacteria Bacteria 48.9 0.00261   NR MCH9044750.1 2024889 g14266 i0 44.3 0.39186295503212 61 32 39.2 1 459 277 794 852 MCH9044750.1 type I DNA topoisomerase [SAR324 cluster bacterium] diamond 183 48.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30915567 30915567 PRJNA700095_P_NODE_4554_length_924_cov_4.434783_g3621_i0 PRJNA700095 4554 924 4.434783 40.97739492 Bacteria 2 Bacteria Bacteria 187 2.03e-49   NR OGQ00263.1 1797850 g3621 i0 39.2 21.8376623376623 316 148 99.7 8 3 923 291 571 OGQ00263.1 MAG: ATPase [Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12] diamond 20178 187 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12
32465319 32465319 PRJNA700095_P_NODE_37559_length_282_cov_1.468900_g36295_i0 PRJNA700095 37559 282 1.4689 4.142298 Bacteria 2 Bacteria Bacteria 61.6 1.36e-8   NR KPJ76189.1 1703398 g36295 i0 36.7 3.79787234042553 79 49 84 1 274 38 284 361 KPJ76189.1 MAG: hypothetical protein AMJ54_12560 [Deltaproteobacteria bacterium SG8_13] diamond 1071 62 0.993548387096774 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium SG8_13

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;