RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA698538" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

bioproject 1

  • PRJNA698538 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28156790 28156790 PRJNA698538_S_NODE_30825_length_234_cov_4.782609_g30659_i0 PRJNA698538 30825 234 4.782609 11.19130506 Caudoviricetes sp. 2832643 Viruses Viruses 130 5.709999999999999e-37   NR XOR51515.1 2832643 g30659 i0 80.8 0.935897435897436 73 14 93.6 0 2 220 46 118 XOR51515.1 MAG: ribonucleotide reductase stimulatory protein [Caudoviricetes sp.] diamond 219 130 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
30145586 30145586 PRJNA698538_S_NODE_23532_length_265_cov_2.895833_g23366_i0 PRJNA698538 23532 265 2.895833 7.67395745 Skokie dicistro-like virus 2789443 Viruses Viruses 176 8.8e-49   NR QPG92978.1 2789443 g23366 i0 92 0.99622641509434 88 7 99.6 0 1 264 922 1009 QPG92978.1 polyprotein 1 [Skokie dicistro-like virus] diamond 264 176 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
30872564 30872564 PRJNA698538_S_NODE_18134_length_294_cov_1.104072_g17968_i0 PRJNA698538 18134 294 1.104072 3.24597168 Baboon endogenous virus strain M7 11764 Viruses Viruses 192 1.5699999999999995e-54   NR YP_009109689.1 11764 g17968 i0 96.9 5.96938775510204 97 3 99 0 291 1 1146 1242 YP_009109689.1 gag-pol precursor polyprotein [Baboon endogenous virus strain M7] diamond 1755 193 0.994818652849741 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Baboon endogenous virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;