RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA695273" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA695273 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27240643 27240643 PRJNA695273_P_NODE_62003_length_348_cov_1.120000_g61245_i0 PRJNA695273 62003 348 1.12 3.8976 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 51.2 1.36e-4   NR KAJ5077394.1 1746090 g61245 i0 37.7 0.982758620689655 114 66 96.6 4 347 12 1785 1895 KAJ5077394.1 fibronectin type iii domain-containing 3ba-related [Anaeramoeba ignava] diamond 342 51.2 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
27462052 27462052 PRJNA695273_P_NODE_161263_length_241_cov_0.916667_g160505_i0 PRJNA695273 161263 241 0.916667 2.20916747 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 84.7 6.04e-17   NR KAJ5076869.1 1746090 g160505 i0 55.4 1.87966804979253 74 33 92.1 0 10 231 296 369 KAJ5076869.1 faciogenital dysplasia protein [Anaeramoeba ignava] diamond 453 84.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
28546903 28546903 PRJNA695273_P_NODE_154987_length_242_cov_1.757396_g154229_i0 PRJNA695273 154987 242 1.757396 4.25289832 Polymastigidae 302780 Preaxostyla other_Eukaryota 94 7.98e-23   NR KAK2947221.1 2049346 g154229 i0 53.2 2.9504132231405 79 36 96.7 1 238 5 1 79 KAK2947221.1 putative Thioredoxin [Blattamonas nauphoetae] diamond 714 94 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida   Blattamonas Blattamonas nauphoetae
29924820 29924820 PRJNA695273_P_NODE_19631_length_635_cov_2.217082_g18882_i0 PRJNA695273 19631 635 2.217082 14.0784707 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 64.7 4.06e-8   NR KAJ3430691.1 1746091 g18882 i0 37.7 0.500787401574803 106 64 49.6 2 195 509 1519 1623 KAJ3430691.1 leucine-rich repeat isoform f [Anaeramoeba flamelloides] diamond 318 64.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;