RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA695140" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA695140 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30746158 30746158 PRJNA695140_S_NODE_7094_length_198_cov_1.285714_g6913_i0 PRJNA695140 7094 198 1.285714 2.54571372 Cellulomonas sp. RIT-PI-Y 3035297 Bacteria Bacteria 39.7 0.0497   NR WP_263118237.1 3035297 g6913 i0 40 0.833333333333333 55 28 83.3 1 5 169 19 68 WP_263118237.1 FeoA family protein [Cellulomonas sp. RIT-PI-Y] diamond 165 39.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. RIT-PI-Y
31062355 31062355 PRJNA695140_S_NODE_3995_length_261_cov_3.593750_g3814_i0 PRJNA695140 3995 261 3.59375 9.3796875 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 45.8 9.47e-4   NR GIT46276.1 2201156 g3814 i0 47.9 0.551724137931034 48 23 52.9 1 203 66 61 108 GIT46276.1 MAG: hypothetical protein Ct9H300mP12_08610 [Acidimicrobiales bacterium] diamond 144 45.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;