RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA694770" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA694770 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4503805 4503805 PRJNA694770_P_NODE_89124_length_246_cov_0.890173_g88830_i0 PRJNA694770 89124 246 0.890173 2.18982558 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 152 1.4999999999999999e-40   NR DBA03661.1 4803 g88830 i0 84 143.231707317073 81 13 98.8 0 245 3 662 742 DBA03661.1 TPA: hypothetical protein N0F65_006840 [Lagenidium giganteum] diamond 35235 153 0.993464052287582 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
15978261 15978261 PRJNA694770_P_NODE_81273_length_250_cov_0.870056_g80979_i0 PRJNA694770 81273 250 0.870056 2.17514 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 70.9 3.29e-12   NR CCA20669.1 890382 g80979 i0 43.2 3.888 81 45 97.2 1 1 243 173 252 CCA20669.1 lipase putative [Albugo laibachii Nc14] diamond 972 70.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
29387976 29387976 PRJNA694770_P_NODE_24469_length_392_cov_0.830721_g24175_i0 PRJNA694770 24469 392 0.830721 3.25642632 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0292   NR RAW34949.1 29920 g24175 i0 34.3 0.512755102040816 67 36 45.2 2 379 203 40 106 RAW34949.1 hypothetical protein PC110_g8746 [Phytophthora cactorum] diamond 201 43.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
30125279 30125279 PRJNA694770_P_NODE_66452_length_270_cov_0.857868_g66158_i0 PRJNA694770 66452 270 0.857868 2.3162436 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 64.3 1.36e-9   NR TMW65555.1 41045 g66158 i0 65.1 11.133333333333301 43 15 47.8 0 142 270 397 439 TMW65555.1 hypothetical protein Poli38472_008197 [Pythium oligandrum] diamond 3006 64.7 0.993817619783617 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;