RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA694770" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA694770 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29893228 29893228 PRJNA694770_P_NODE_11531_length_550_cov_1.125786_g11239_i0 PRJNA694770 11531 550 1.125786 6.191823 Ostertagia ostertagi 6317 Nematoda Nematoda 359 7.009999999999997e-119   NR KAK6021057.1 6317 g11239 i0 99.5 0.998181818181818 183 1 99.8 0 2 550 35 217 KAK6021057.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ostertagia ostertagi] diamond 549 359 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
30399080 30399080 PRJNA694770_P_NODE_93273_length_244_cov_0.900585_g92979_i0 PRJNA694770 93273 244 0.900585 2.1974274 Auanema sp. JU1783 2878363 Nematoda Nematoda 75.1 1.5700000000000001e-13   NR CAI4220994.1 2878363 g92979 i0 45.3 0.922131147540984 75 41 92.2 0 226 2 1378 1452 CAI4220994.1 unnamed protein product [Auanema sp. JU1783] diamond 225 75.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
30630864 30630864 PRJNA694770_P_NODE_68133_length_267_cov_1.484536_g67839_i0 PRJNA694770 68133 267 1.484536 3.96371112 Metazoa 33208 Nematoda Nematoda 52.4 1.94e-5   NR KAE9417004.1 6313 g67839 i0 84.6 2.92134831460674 26 4 29.2 0 228 151 1 26 KAE9417004.1 hypothetical protein Angca_004366 [Angiostrongylus cantonensis] diamond 780 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;