RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA694557" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA694557 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26639391 26639391 PRJNA694557_P_NODE_5661_length_618_cov_1.361468_g5443_i0 PRJNA694557 5661 618 1.361468 8.41387224 Mizuhopecten yessoensis 6573 Mollusca Mollusca 47.8 0.0203   NR OWF52509.1 6573 g5443 i0 41.5 0.257281553398058 53 31 25.7 0 296 138 1487 1539 OWF52509.1 Vacuolar protein sorting-associated protein 13D [Mizuhopecten yessoensis] diamond 159 47.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
29241314 29241314 PRJNA694557_P_NODE_26049_length_239_cov_2.734940_g25829_i0 PRJNA694557 26049 239 2.73494 6.5365066 Metazoa 33208 Mollusca Mollusca 107 3.9600000000000006e-27   NR XP_012941389.2 6500 g25829 i0 66.7 13.7071129707113 78 26 97.9 0 236 3 31 108 XP_012941389.2 tubulin alpha-1 chain, partial [Aplysia californica] diamond 3276 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;