RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where analysis = "diamond", bioproject = "PRJNA694557" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 21 ✖

tax_kingdom 1

bioproject 1

  • PRJNA694557 · 21 ✖

analysis 1

  • diamond · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
673288 673288 PRJNA694557_P_NODE_17381_length_306_cov_2.030043_g17161_i0 PRJNA694557 17381 306 2.030043 6.21193158 Pseudomonadati 3379134 Bacteria Bacteria 85.5 4.33e-18   NR WP_263356596.1 542300 g17161 i0 66.2 1.2843137254902 65 22 63.7 0 306 112 136 200 WP_263356596.1 cation transporter [Acidicapsa ligni] diamond 393 85.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidicapsa Acidicapsa ligni
10877295 10877295 PRJNA694557_P_NODE_17189_length_308_cov_3.153191_g16969_i0 PRJNA694557 17189 308 3.153191 9.71182828 Acidobacteriota bacterium 1978231 Bacteria Bacteria 153 6.2299999999999996e-46   NR MDQ4122153.1 1978231 g16969 i0 94 0.808441558441558 83 5 80.8 0 308 60 21 103 MDQ4122153.1 co-chaperone GroES [Acidobacteriota bacterium] diamond 249 153 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
14702322 14702322 PRJNA694557_P_NODE_21512_length_266_cov_1.595855_g21292_i0 PRJNA694557 21512 266 1.595855 4.2449743 Candidatus Acidiferrum 2817524 Bacteria Bacteria 142 5.829999999999999e-38   NR HXB69149.1 2952895 g21292 i0 81.9 4.68045112781955 83 15 93.6 0 11 259 12 94 HXB69149.1 N-6 DNA methylase [Candidatus Acidiferrales bacterium] diamond 1245 142 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
14702532 14702532 PRJNA694557_P_NODE_9212_length_454_cov_3.866142_g8992_i0 PRJNA694557 9212 454 3.866142 17.55228468 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 240 1.07e-75   NR MEO6051104.1 2283092 g8992 i0 82.8 1.95594713656388 145 25 95.8 0 436 2 89 233 MEO6051104.1 threonine ammonia-lyase [Pyrinomonadaceae bacterium] diamond 888 240 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
19031212 19031212 PRJNA694557_P_NODE_18335_length_295_cov_3.981982_g18115_i0 PRJNA694557 18335 295 3.981982 11.7468469 Bryobacterales bacterium 2026791 Bacteria Bacteria 174 1.99e-51   NR MBL8230456.1 2026791 g18115 i0 90.2 0.935593220338983 92 9 93.6 0 278 3 207 298 MBL8230456.1 glycosyltransferase family 2 protein [Bryobacterales bacterium] diamond 276 174 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
22856938 22856938 PRJNA694557_P_NODE_20938_length_271_cov_1.555556_g20718_i0 PRJNA694557 20938 271 1.555556 4.21555676 Acidobacteriota bacterium 1978231 Bacteria Bacteria 136 3.7e-36   NR MBU6202576.1 1978231 g20718 i0 88.6 0.874538745387454 79 9 87.5 0 259 23 128 206 MBU6202576.1 ABC transporter ATP-binding protein [Acidobacteriota bacterium] diamond 237 136 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27019324 27019324 PRJNA694557_P_NODE_24522_length_246_cov_1.780347_g24302_i0 PRJNA694557 24522 246 1.780347 4.37965362 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 103 8.11e-24   NR HSL81264.1 2651171 g24302 i0 56.3 0.975609756097561 80 35 97.6 0 4 243 340 419 HSL81264.1 L,D-transpeptidase family protein [Thermoanaerobaculia bacterium] diamond 240 103 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
27062261 27062261 PRJNA694557_P_NODE_10442_length_420_cov_4.060519_g10222_i0 PRJNA694557 10442 420 4.060519 17.0541798 Bacteria 2 Bacteria Bacteria 238 8.580000000000001e-70   NR MBI2685981.1 1978231 g10222 i0 79.5 2.82857142857143 132 27 94.3 0 7 402 975 1106 MBI2685981.1 TonB-dependent receptor [Acidobacteriota bacterium] diamond 1188 239 0.99581589958159 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27588199 27588199 PRJNA694557_P_NODE_20484_length_275_cov_1.668317_g20264_i0 PRJNA694557 20484 275 1.668317 4.58787175 Blastocatellia bacterium 2052146 Bacteria Bacteria 181 6.18e-51   NR HEX9003066.1 2052146 g20264 i0 100 0.992727272727273 91 0 99.3 0 273 1 188 278 HEX9003066.1 putative Ig domain-containing protein [Blastocatellia bacterium] diamond 273 181 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
27840481 27840481 PRJNA694557_P_NODE_21964_length_262_cov_2.179894_g21744_i0 PRJNA694557 21964 262 2.179894 5.71132228 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 51.2 1.69e-5   NR HEY0429767.1 2283092 g21744 i0 66.7 0.377862595419847 33 11 37.8 0 112 14 124 156 HEY0429767.1 tetratricopeptide repeat protein [Pyrinomonadaceae bacterium] diamond 99 51.2 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28440740 28440740 PRJNA694557_P_NODE_4906_length_673_cov_1.775000_g4690_i0 PRJNA694557 4906 673 1.775 11.94575 Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 1797187 Bacteria Bacteria 365 1.45e-114   NR OFW03494.1 1797187 g4690 i0 83 0.945022288261516 212 36 94.5 0 2 637 863 1074 OFW03494.1 MAG: hypothetical protein A3G20_06590, partial [Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11] diamond 636 365 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11
28535499 28535499 PRJNA694557_P_NODE_527_length_2182_cov_4.237079_g483_i0 PRJNA694557 527 2182 4.237079 92.45306378 Acidobacteria bacterium RBG_16_64_8 1797172 Bacteria Bacteria 165 1.76e-40   NR OFV79361.1 1797172 g483 i0 44.7 0.261228230980752 190 102 26 2 2172 1606 130 317 OFV79361.1 MAG: hypothetical protein A2W26_00100 [Acidobacteria bacterium RBG_16_64_8] diamond 570 165 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteria bacterium RBG_16_64_8
28598606 28598606 PRJNA694557_P_NODE_15067_length_334_cov_3.394636_g14847_i0 PRJNA694557 15067 334 3.394636 11.33808424 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 113 1.51e-26   NR MBX9604173.1 2212468 g14847 i0 74 0.655688622754491 73 19 65.6 0 221 3 4 76 MBX9604173.1 glycosyl hydrolase [Bryobacteraceae bacterium] diamond 219 113 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29766567 29766567 PRJNA694557_P_NODE_21671_length_264_cov_7.539267_g21451_i0 PRJNA694557 21671 264 7.539267 19.90366488 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 85.1 1.37e-18   NR HEY0429767.1 2283092 g21451 i0 63.9 0.693181818181818 61 22 69.3 0 243 61 100 160 HEY0429767.1 tetratricopeptide repeat protein [Pyrinomonadaceae bacterium] diamond 183 85.1 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29829803 29829803 PRJNA694557_P_NODE_4491_length_711_cov_2.567398_g4279_i0 PRJNA694557 4491 711 2.567398 18.25419978 Acidobacteriota bacterium 1978231 Bacteria Bacteria 211 4.47e-59   NR MBL8172928.1 1978231 g4279 i0 80.5 0.540084388185654 128 25 54 0 461 78 139 266 MBL8172928.1 hypothetical protein [Acidobacteriota bacterium] diamond 384 211 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30208706 30208706 PRJNA694557_P_NODE_16832_length_312_cov_2.573222_g16612_i0 PRJNA694557 16832 312 2.573222 8.02845264 Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 1797187 Bacteria Bacteria 170 1.32e-46   NR OFW03494.1 1797187 g16612 i0 81.7 2 104 19 100 0 312 1 1164 1267 OFW03494.1 MAG: hypothetical protein A3G20_06590, partial [Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11] diamond 624 170 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11
30524896 30524896 PRJNA694557_P_NODE_4693_length_692_cov_4.471729_g4479_i0 PRJNA694557 4693 692 4.471729 30.94436468 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 48.5 0.00954   NR HEX8294468.1 2283092 g4479 i0 30.5 0.554913294797688 128 71 52.9 5 264 629 24 139 HEX8294468.1 metal-dependent hydrolase [Pyrinomonadaceae bacterium] diamond 384 48.5 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
31346649 31346649 PRJNA694557_P_NODE_26556_length_231_cov_2.848101_g26336_i0 PRJNA694557 26556 231 2.848101 6.57911331 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 81.3 2.32e-17   NR MEP6925069.1 2283092 g26336 i0 83.3 0.623376623376623 48 8 62.3 0 2 145 104 151 MEP6925069.1 PA2169 family four-helix-bundle protein [Pyrinomonadaceae bacterium] diamond 144 81.3 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
31504861 31504861 PRJNA694557_P_NODE_12056_length_384_cov_1.633441_g11836_i0 PRJNA694557 12056 384 1.633441 6.27241344 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 175 1.15e-52   NR MEP6923303.1 2283092 g11836 i0 68.8 1 128 40 100 0 1 384 10 137 MEP6923303.1 50S ribosomal protein L25 [Pyrinomonadaceae bacterium] diamond 384 175 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
32148794 32148794 PRJNA694557_P_NODE_17658_length_303_cov_1.591304_g17438_i0 PRJNA694557 17658 303 1.591304 4.82165112 Bacteria 2 Bacteria Bacteria 169 3.08e-51   NR MCA1849487.1 1978231 g17438 i0 83 19.8019801980198 100 17 99 0 302 3 52 151 MCA1849487.1 ribosome recycling factor [Acidobacteriota bacterium] diamond 6000 169 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32359162 32359162 PRJNA694557_P_NODE_9859_length_435_cov_16.168508_g9639_i0 PRJNA694557 9859 435 16.168508 70.3330098 Acidobacteriota bacterium 1978231 Bacteria Bacteria 53.5 3.94e-5   NR MBX3291457.1 1978231 g9639 i0 36.4 0.606896551724138 88 50 59.3 4 69 326 234 317 MBX3291457.1 bacteriocin fulvocin C-related protein [Acidobacteriota bacterium] diamond 264 53.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;