RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA694557" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA694557 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27809310 27809310 PRJNA694557_P_NODE_21084_length_269_cov_3.678571_g20864_i0 PRJNA694557 21084 269 3.678571 9.89535599 Symbiochloris irregularis 706552 Plants Plants 62 8.48e-9   NR KAK9792686.1 706552 g20864 i0 52 0.557620817843866 50 24 55.8 0 237 88 230 279 KAK9792686.1 hypothetical protein WJX73_000704 [Symbiochloris irregularis] diamond 150 62 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris irregularis
29766568 29766568 PRJNA694557_P_NODE_22571_length_257_cov_2.510870_g22351_i0 PRJNA694557 22571 257 2.51087 6.4529359 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 48.1 5.53e-4   NR KAL4541612.1 1650286 g22351 i0 32.9 0.817120622568093 70 44 78.2 2 56 256 345 414 KAL4541612.1 hypothetical protein Ndes2437B_g05958 [Chlorella desiccata (nom. nud.)] diamond 210 48.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
32370388 32370388 PRJNA694557_P_NODE_10979_length_407_cov_3.230539_g10759_i0 PRJNA694557 10979 407 3.230539 13.14829373 Chlorophyceae 3166 Plants Plants 155 3.19e-41   NR KXZ51704.1 33097 g10759 i0 53.5 9.53808353808354 129 60 95.1 0 5 391 350 478 KXZ51704.1 hypothetical protein GPECTOR_11g153 [Gonium pectorale] diamond 3882 156 0.993589743589744 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;