RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA694557" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA694557 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29009302 29009302 PRJNA694557_P_NODE_11088_length_405_cov_1.858434_g10868_i0 PRJNA694557 11088 405 1.858434 7.5266577 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.5 1.47e-14   NR XP_004335120.1 1257118 g10868 i0 54.3 0.6 81 20 60 2 6 248 604 667 XP_004335120.1 phospholipidtranslocating P-type ATPase [Acanthamoeba castellanii str. Neff] diamond 243 80.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31599742 31599742 PRJNA694557_P_NODE_7996_length_496_cov_4.718676_g7776_i0 PRJNA694557 7996 496 4.718676 23.40463296 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.9 3.19e-11   NR XP_004367727.1 1257118 g7776 i0 37.5 1.65120967741935 160 63 96.8 3 492 13 145 267 XP_004367727.1 Autophagy-related protein 27 protein [Acanthamoeba castellanii str. Neff] diamond 819 70.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32737901 32737901 PRJNA694557_P_NODE_4260_length_734_cov_2.683812_g4049_i0 PRJNA694557 4260 734 2.683812 19.69918008 Dictyostelium purpureum 5786 Evosea other_Eukaryota 162 3.5199999999999998e-43   NR XP_003294578.1 5786 g4049 i0 46.7 1.48773841961853 182 82 68.3 1 229 729 115 296 XP_003294578.1 uncharacterized protein DICPUDRAFT_159601 [Dictyostelium purpureum] diamond 1092 162 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
32800543 32800543 PRJNA694557_P_NODE_24040_length_248_cov_1.457143_g23820_i0 PRJNA694557 24040 248 1.457143 3.61371464 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 47 0.00129   NR KAH3745696.1 1580589 g23820 i0 40 1.02822580645161 85 44 98 4 243 1 1077 1158 KAH3745696.1 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Pelomyxa schiedti] diamond 255 47 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;