RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA692200" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA692200 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27524935 27524935 PRJNA692200_S_NODE_6383_length_266_cov_1.834101_g6326_i0 PRJNA692200 6383 266 1.834101 4.87870866 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 58.2 8.29e-9   NR KAJ9450018.1 91374 g6326 i0 66.7 0.406015037593985 36 12 40.6 0 263 156 51 86 KAJ9450018.1 Dynein light chain 1 [Diplonema papillatum] diamond 108 58.2 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
28250985 28250985 PRJNA692200_S_NODE_23386_length_155_cov_2.622642_g23329_i0 PRJNA692200 23386 155 2.622642 4.0650951 Strigomonas culicis 28005 Euglenozoa other_Eukaryota 52 6.1e-6   NR EPY16068.1 28005 g23329 i0 53.3 0.870967741935484 45 21 87.1 0 20 154 2006 2050 EPY16068.1 hypothetical protein STCU_11570 [Strigomonas culicis] diamond 135 52 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
31979084 31979084 PRJNA692200_S_NODE_11758_length_208_cov_3.616352_g11701_i0 PRJNA692200 11758 208 3.616352 7.52201216 Phytomonas sp. Hart1 223615 Euglenozoa other_Eukaryota 50.1 6.1e-5   NR CCW71629.1 223615 g11701 i0 44.6 3.27403846153846 56 31 80.8 0 203 36 2175 2230 CCW71629.1 unnamed protein product [Phytomonas sp. Hart1] diamond 681 50.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. Hart1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;