RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA692200" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA692200 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28219316 28219316 PRJNA692200_S_NODE_17246_length_177_cov_1.359375_g17189_i0 PRJNA692200 17246 177 1.359375 2.40609375 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 57 1.4e-7   NR VEU43691.1 183589 g17189 i0 56.4 0.932203389830508 55 20 89.8 3 5 163 443 495 VEU43691.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 165 57 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
31389662 31389662 PRJNA692200_S_NODE_21076_length_164_cov_1.521739_g21019_i0 PRJNA692200 21076 164 1.521739 2.49565196 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 46.2 7.46e-4   NR KAL3766746.1 382360 g21019 i0 44.2 1.90243902439024 52 29 95.1 0 164 9 219 270 KAL3766746.1 hypothetical protein ACHAWO_005144 [Cyclotella atomus] diamond 312 46.2 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella atomus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;