RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA692200" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA692200 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14701821 14701821 PRJNA692200_S_NODE_2732_length_349_cov_415.153333_g2675_i0 PRJNA692200 2732 349 415.153333 1448.88513217 Acidobacteriota bacterium 1978231 Bacteria Bacteria 73.2 2.56e-12   NR MBX3265733.1 1978231 g2675 i0 43.2 0.636103151862464 74 38 61 3 345 133 159 231 MBX3265733.1 hypothetical protein [Acidobacteriota bacterium] diamond 222 73.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29419227 29419227 PRJNA692200_S_NODE_11309_length_212_cov_1.889571_g11252_i0 PRJNA692200 11309 212 1.889571 4.00589052 Acidobacteriota bacterium 1978231 Bacteria Bacteria 44.3 0.00716   NR MBP7146994.1 1978231 g11252 i0 46.9 1.35849056603774 49 17 69.3 1 206 60 260 299 MBP7146994.1 C1 family peptidase [Acidobacteriota bacterium] diamond 288 44.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30840919 30840919 PRJNA692200_S_NODE_10854_length_216_cov_1.041916_g10797_i0 PRJNA692200 10854 216 1.041916 2.25053856 Geothrix sp. 21YS21S-4 3068889 Bacteria Bacteria 109 7.12e-26   NR WP_306591297.1 3068889 g10797 i0 67.6 0.986111111111111 71 23 98.6 0 213 1 321 391 WP_306591297.1 TonB-dependent receptor [Geothrix sp. 21YS21S-4] diamond 213 109 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-4
30872420 30872420 PRJNA692200_S_NODE_1054_length_437_cov_29.443299_g1008_i0 PRJNA692200 1054 437 29.443299 128.66721663 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 81.6 3.64e-15   NR MDR3737318.1 2052142 g1008 i0 41.9 0.851258581235698 124 68 83.1 3 427 65 186 308 MDR3737318.1 hypothetical protein [Acidobacteriaceae bacterium] diamond 372 81.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
31188093 31188093 PRJNA692200_S_NODE_15755_length_184_cov_2.259259_g15698_i0 PRJNA692200 15755 184 2.259259 4.15703656 Acidobacteriota bacterium 1978231 Bacteria Bacteria 67.4 5.7e-13   NR MBA3600496.1 1978231 g15698 i0 56.9 8.51086956521739 58 25 94.6 0 3 176 18 75 MBA3600496.1 homogentisate 1,2-dioxygenase [Acidobacteriota bacterium] diamond 1566 67.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;