RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA691918" and tax_superkingdom = "Bacteria"

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tax_kingdom 2

tax_superkingdom 1

  • Bacteria · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA691918 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21074943 21074943 PRJNA691918_S_NODE_57_length_250_cov_13654.908676_g56_i0 PRJNA691918 57 250 13654.908676 34137.27169 Bacteroidota bacterium 1898104 Bacteria Bacteria 123 3.5099999999999993e-31   NR MFM1971365.1 1898104 g56 i0 75 0.912 76 19 91.2 0 1 228 114 189 MFM1971365.1 Phytophthora parasitica virus [Bacteroidota bacterium] diamond 228 123 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
29387962 29387962 PRJNA691918_S_NODE_289_length_179_cov_20.114865_g288_i0 PRJNA691918 289 179 20.114865000000002 36.00560835 Sphingobacteriia bacterium 28-36-52 1970573 Bacteria Bacteria 58.9 3.09e-8   NR OYY99577.1 1970573 g288 i0 86.2 0.486033519553073 29 4 48.6 0 92 178 1 29 OYY99577.1 MAG: hypothetical protein B7Y37_13885 [Sphingobacteriia bacterium 28-36-52] diamond 87 58.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia       Sphingobacteriia bacterium 28-36-52
29513921 29513921 PRJNA691918_S_NODE_430_length_154_cov_3.934959_g429_i0 PRJNA691918 430 154 3.934959 6.05983686 Fidelibacterota bacterium 2026760 Bacteria Bacteria 47.4 2.06e-4   NR MBT5759297.1 2026760 g429 i0 61.3 0.603896103896104 31 12 60.4 0 2 94 167 197 MBT5759297.1 hypothetical protein [Fidelibacterota bacterium] diamond 93 47.4 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30493373 30493373 PRJNA691918_S_NODE_33_length_275_cov_14.651639_g32_i0 PRJNA691918 33 275 14.651639 40.29200725 Gilvimarinus sp. 1_MG-2023 3062638 Bacteria Bacteria 112 1.92e-30   NR MDO6749822.1 3062638 g32 i0 100 1.13454545454545 52 0 56.7 0 274 119 14 65 MDO6749822.1 hypothetical protein [Gilvimarinus sp. 1_MG-2023] diamond 312 112 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Gilvimarinus Gilvimarinus sp. 1_MG-2023
32580510 32580510 PRJNA691918_S_NODE_259_length_185_cov_49.207792_g258_i0 PRJNA691918 259 185 49.207792 91.0344152 Mycoplasmopsis arginini 2094 Bacteria Bacteria 72.4 4.94e-15   NR WP_282459951.1 2094 g258 i0 100 0.551351351351351 34 0 55.1 0 48 149 39 72 WP_282459951.1 hypothetical protein, partial [Mycoplasmopsis arginini] diamond 102 72.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;