RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA690592" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA690592 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1947886 1947886 PRJNA690592_S_NODE_6002_length_1117_cov_2.328544_g5442_i0 PRJNA690592 6002 1117 2.328544 26.00983648 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 513 1.66e-179   NR AAP88974.1 5775 g5442 i0 74.9 5.23992837958818 323 81 86.8 0 1 969 66 388 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 5853 516 0.994186046511628 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
1948154 1948154 PRJNA690592_S_NODE_9762_length_918_cov_8.375148_g9029_i0 PRJNA690592 9762 918 8.375148 76.88385864 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 280 1.4799999999999999e-90   NR AAY21191.1 5778 g9029 i0 61.8 0.777777777777778 238 88 77.8 2 796 83 12 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 714 280 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8325215 8325215 PRJNA690592_S_NODE_9167_length_942_cov_5.329114_g8454_i0 PRJNA690592 9167 942 5.329114 50.20025388 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 283 1.25e-91   NR AAY21191.1 5778 g8454 i0 63.1 0.751592356687898 236 86 75.2 1 121 828 12 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 708 283 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9600416 9600416 PRJNA690592_S_NODE_72788_length_374_cov_1.279070_g71774_i0 PRJNA690592 72788 374 1.27907 4.7837218 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 198 1.1199999999999999e-60   NR AFX84545.1 5778 g71774 i0 75 10.9171122994652 124 31 99.5 0 372 1 22 145 AFX84545.1 alpha tubulin, partial [Vermamoeba vermiformis] diamond 4083 199 0.994974874371859 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21073976 21073976 PRJNA690592_S_NODE_2117_length_1606_cov_8.810176_g1821_i0 PRJNA690592 2117 1606 8.810176 141.49142656 Copromyxa protea 931554 Tubulinea other_Eukaryota 769 2.4e-276   NR BAN33737.1 931554 g1821 i0 81.2 2.57036114570361 463 81 85.4 1 1572 202 1 463 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 4128 769 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
22348143 22348143 PRJNA690592_S_NODE_11898_length_843_cov_3.467532_g11095_i0 PRJNA690592 11898 843 3.467532 29.23129476 Amoeba proteus 5775 Tubulinea other_Eukaryota 423 2.439999999999999e-145   NR AAP88974.1 5775 g11095 i0 78.2 0.9644128113879 271 56 96.1 2 841 32 122 390 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 813 423 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28345716 28345716 PRJNA690592_S_NODE_173866_length_259_cov_1.241935_g172852_i0 PRJNA690592 173866 259 1.241935 3.21661165 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 117 1.61e-30   NR ABD46545.1 5778 g172852 i0 72.7 0.891891891891892 77 21 89.2 0 28 258 116 192 ABD46545.1 aldehyde dehydrogenase, partial [Vermamoeba vermiformis] diamond 231 117 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28377163 28377163 PRJNA690592_S_NODE_11066_length_869_cov_4.407035_g10282_i0 PRJNA690592 11066 869 4.407035 38.29713415 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 191 2.03e-57   NR ABD72565.1 5778 g10282 i0 65 0.472957422324511 137 48 47.3 0 729 319 1 137 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 411 191 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28472218 28472218 PRJNA690592_S_NODE_23806_length_615_cov_2.872694_g22818_i0 PRJNA690592 23806 615 2.872694 17.6670681 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 163 6.789999999999998e-48   NR ABD72565.1 5778 g22818 i0 56.1 0.678048780487805 139 59 67.8 1 139 555 1 137 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 417 163 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29103707 29103707 PRJNA690592_S_NODE_214788_length_241_cov_1.226190_g213774_i0 PRJNA690592 214788 241 1.22619 2.9551179 Amoeba proteus 5775 Tubulinea other_Eukaryota 47.8 5.48e-4   NR AKN09692.1 5775 g213774 i0 32.9 0.983402489626556 79 51 95.9 1 6 236 149 227 AKN09692.1 Tom40 [Amoeba proteus] diamond 237 47.8 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
29135362 29135362 PRJNA690592_S_NODE_194849_length_248_cov_0.880000_g193835_i0 PRJNA690592 194849 248 0.88 2.1824 Arcella hemisphaerica 497998 Tubulinea other_Eukaryota 120 1.71e-31   NR ADM22175.1 497998 g193835 i0 74.6 0.858870967741935 71 18 85.9 0 35 247 154 224 ADM22175.1 actin, partial [Arcella hemisphaerica] diamond 213 120 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
29956043 29956043 PRJNA690592_S_NODE_105811_length_320_cov_1.870445_g104797_i0 PRJNA690592 105811 320 1.870445 5.985424 Copromyxa protea 931554 Tubulinea other_Eukaryota 117 1.48e-28   NR BAN33737.1 931554 g104797 i0 89.1 1.2375 64 7 60 0 5 196 401 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 396 117 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
32169150 32169150 PRJNA690592_S_NODE_194338_length_248_cov_1.320000_g193324_i0 PRJNA690592 194338 248 1.32 3.2736 Amoeba proteus 5775 Tubulinea other_Eukaryota 114 2.6e-27   NR AKN09691.1 5775 g193324 i0 59.3 1.97177419354839 81 32 98 1 5 247 594 673 AKN09691.1 Tom70 [Amoeba proteus] diamond 489 114 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;