RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA690592" and tax_phylum = "Gastrotricha"

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tax_superkingdom 1

tax_phylum 1

  • Gastrotricha · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA690592 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7556937 7556937 PRJNA690592_S_NODE_214786_length_241_cov_1.232143_g213772_i0 PRJNA690592 214786 241 1.232143 2.96946463 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 144 1.42e-38   NR YP_009136573.1 1194616 g213772 i0 97.4 0.95850622406639 77 2 95.9 0 11 241 207 283 YP_009136573.1 NADH dehydrogenase subunit 5 [Lepidodermella squamata] diamond 231 144 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
27145300 27145300 PRJNA690592_S_NODE_30322_length_550_cov_1.756813_g29318_i0 PRJNA690592 30322 550 1.756813 9.6624715 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 278 4.7e-89   NR YP_009136572.1 1194616 g29318 i0 98.1 0.845454545454545 155 3 84.5 0 85 549 254 408 YP_009136572.1 NADH dehydrogenase subunit 4 [Lepidodermella squamata] diamond 465 278 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
28566737 28566737 PRJNA690592_S_NODE_208767_length_243_cov_1.358824_g207753_i0 PRJNA690592 208767 243 1.358824 3.30194232 Litigonotus ghinii 3104745 Gastrotricha other_Eukaryota 124 1.2499999999999998e-32   NR XCN99742.1 3104745 g207753 i0 78.5 0.975308641975309 79 17 97.5 0 239 3 10 88 XCN99742.1 NADH dehydrogenase subunit 2 [Litigonotus ghinii] diamond 237 124 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Litigonotus Litigonotus ghinii
31757675 31757675 PRJNA690592_S_NODE_68697_length_383_cov_1.680645_g67683_i0 PRJNA690592 68697 383 1.680645 6.43687035 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 224 3.2e-68   NR YP_009136573.1 1194616 g67683 i0 95.3 0.994778067885117 127 6 99.5 0 3 383 13 139 YP_009136573.1 NADH dehydrogenase subunit 5 [Lepidodermella squamata] diamond 381 224 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
32769045 32769045 PRJNA690592_S_NODE_43240_length_468_cov_1.987342_g42226_i0 PRJNA690592 43240 468 1.987342 9.30076056 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 216 5.59e-67   NR YP_009136579.1 1194616 g42226 i0 91.4 0.82051282051282 128 11 82.1 0 8 391 164 291 YP_009136579.1 NADH dehydrogenase subunit 2 [Lepidodermella squamata] diamond 384 216 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;