RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA690592" and tax_phylum = "Candidatus Latescibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA690592 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27410200 27410200 PRJNA690592_S_NODE_23883_length_614_cov_2.977819_g22895_i0 PRJNA690592 23883 614 2.977819 18.28380866 FCB group 1783270 Bacteria Bacteria 98.2 7.839999999999999e-23   NR UCE02090.1 2053570 g22895 i0 68.7 2.87296416938111 67 21 32.7 0 118 318 24 90 UCE02090.1 MAG: cold-shock protein [Candidatus Latescibacterota bacterium] diamond 1764 98.2 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
30145374 30145374 PRJNA690592_S_NODE_214632_length_241_cov_1.333333_g213618_i0 PRJNA690592 214632 241 1.333333 3.21333253 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 43.1 0.0261   NR MFT5369842.1 2053570 g213618 i0 29.9 0.95850622406639 77 53 94.6 1 240 13 192 268 MFT5369842.1 dTDP-4-amino-4,6-dideoxygalactose transaminase [Candidatus Latescibacterota bacterium] diamond 231 43.1 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
32264216 32264216 PRJNA690592_S_NODE_88738_length_344_cov_1.136531_g87724_i0 PRJNA690592 88738 344 1.136531 3.90966664 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 97.1 7.13e-22   NR MFA6472600.1 2053570 g87724 i0 48.3 1.01162790697674 116 55 99.4 2 342 1 36 148 MFA6472600.1 CocE/NonD family hydrolase [Candidatus Latescibacterota bacterium] diamond 348 97.1 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;