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contig_metadata

35 rows where analysis = "diamond", bioproject = "PRJNA690234" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 35 ✖

tax_kingdom 1

bioproject 1

  • PRJNA690234 · 35 ✖

analysis 1

  • diamond · 35 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5007175 5007175 PRJNA690234_P_NODE_25284_length_253_cov_0.866667_g24917_i0 PRJNA690234 25284 253 0.866667 2.19266751 Aquabacterium sp. 1872578 Bacteria Bacteria 102 5.7099999999999996e-24   NR WP_375213975.1 1872578 g24917 i0 86.4 0.699604743083004 59 8 70 0 77 253 1 59 WP_375213975.1 alpha/beta hydrolase [Aquabacterium sp.] diamond 177 102 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales   Aquabacterium Aquabacterium sp.
19030554 19030554 PRJNA690234_P_NODE_28155_length_248_cov_0.891429_g27788_i0 PRJNA690234 28155 248 0.891429 2.21074392 Paracoccaceae bacterium 1904441 Bacteria Bacteria 161 2.2099999999999998e-46   NR HLS19755.1 1904441 g27788 i0 93.9 5.91532258064516 82 5 99.2 0 247 2 148 229 HLS19755.1 type I-E CRISPR-associated protein Cas7/Cse4/CasC [Paracoccaceae bacterium] diamond 1467 161 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae   Paracoccaceae bacterium
26670605 26670605 PRJNA690234_P_NODE_19901_length_284_cov_2.104265_g19534_i0 PRJNA690234 19901 284 2.104265 5.9761126 Candidatus Thiodiazotropha sp. 2847306 Bacteria Bacteria 50.4 1.21e-4   NR MEW8511772.1 2847306 g19534 i0 87.5 0.253521126760563 24 3 25.4 0 150 221 736 759 MEW8511772.1 hypothetical protein [Candidatus Thiodiazotropha sp.] diamond 72 50.4 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Sedimenticolaceae Candidatus Thiodiazotropha Candidatus Thiodiazotropha sp.
26765927 26765927 PRJNA690234_P_NODE_25121_length_253_cov_0.866667_g24754_i0 PRJNA690234 25121 253 0.866667 2.19266751 Burkholderiales bacterium 1891238 Bacteria Bacteria 152 4.08e-45   NR RTL37359.1 1891238 g24754 i0 94 0.99604743083004 84 5 99.6 0 252 1 67 150 RTL37359.1 MAG: CinA family protein [Burkholderiales bacterium] diamond 252 152 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales     Burkholderiales bacterium
26797552 26797552 PRJNA690234_P_NODE_29041_length_246_cov_1.335260_g28674_i0 PRJNA690234 29041 246 1.33526 3.2847396 Vulcaniibacterium thermophilum 1169913 Bacteria Bacteria 144 1.93e-41   NR WP_146474187.1 1169913 g28674 i0 100 0.817073170731707 67 0 81.7 0 244 44 129 195 WP_146474187.1 chemotaxis protein CheW [Vulcaniibacterium thermophilum] diamond 201 144 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Vulcaniibacterium Vulcaniibacterium thermophilum
27493227 27493227 PRJNA690234_P_NODE_17123_length_307_cov_1.000000_g16756_i0 PRJNA690234 17123 307 1 3.07 Hyphomonadaceae bacterium 2026748 Bacteria Bacteria 92.4 2.69e-20   NR MEQ1784464.1 2026748 g16756 i0 43.3 9.69381107491857 97 55 94.8 0 16 306 35 131 MEQ1784464.1 enoyl-CoA hydratase [Hyphomonadaceae bacterium] diamond 2976 92.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae   Hyphomonadaceae bacterium
28030022 28030022 PRJNA690234_P_NODE_32845_length_222_cov_80.973154_g32478_i0 PRJNA690234 32845 222 80.973154 179.76040188 Klebsiella pneumoniae 573 Bacteria Bacteria 114 1.19e-30   NR WP_416532323.1 573 g32478 i0 91.5 0.797297297297297 59 5 79.7 0 178 2 86 144 WP_416532323.1 hypothetical protein, partial [Klebsiella pneumoniae] diamond 177 114 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
28124690 28124690 PRJNA690234_P_NODE_18785_length_292_cov_1.584475_g18418_i0 PRJNA690234 18785 292 1.584475 4.626667 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 42.4 0.0176   NR TPW01210.1 1913988 g18418 i0 33.3 0.678082191780822 66 44 67.8 0 266 69 5 70 TPW01210.1 MAG: N-acetylglucosamine-6-phosphate deacetylase, partial [Alphaproteobacteria bacterium] diamond 198 42.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
28156450 28156450 PRJNA690234_P_NODE_24545_length_255_cov_2.456044_g24178_i0 PRJNA690234 24545 255 2.456044 6.2629122 Lysobacterales bacterium 2006849 Bacteria Bacteria 45.1 0.00606   NR RPI13849.1 2006849 g24178 i0 43.2 1.89411764705882 81 42 90.6 3 14 244 178 258 RPI13849.1 MAG: YgcG family protein [Lysobacterales bacterium] diamond 483 45.1 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales     Lysobacterales bacterium
28314184 28314184 PRJNA690234_P_NODE_9546_length_414_cov_1.143695_g9180_i0 PRJNA690234 9546 414 1.143695 4.7348973 Rhodoferax sp. 50421 Bacteria Bacteria 170 1.87e-47   NR MEO8118384.1 50421 g9180 i0 59.4 2.8768115942029 133 54 96.4 0 3 401 394 526 MEO8118384.1 L-glutamate gamma-semialdehyde dehydrogenase [Rhodoferax sp.] diamond 1191 170 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax sp.
28356987 28356987 PRJNA690234_P_NODE_22786_length_266_cov_1.316062_g22419_i0 PRJNA690234 22786 266 1.316062 3.50072492 Sedimenticolaceae 3067276 Bacteria Bacteria 95.5 3.850000000000001e-21   NR MES9881870.1 1940285 g22419 i0 60 3.22556390977444 100 27 98.1 4 263 3 174 273 MES9881870.1 DDE-type integrase/transposase/recombinase [Sedimenticola sp.] diamond 858 95.5 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Sedimenticolaceae Sedimenticola Sedimenticola sp.
29040516 29040516 PRJNA690234_P_NODE_21048_length_276_cov_1.965517_g20681_i0 PRJNA690234 21048 276 1.965517 5.42482692 Curvibacter gracilis 230310 Bacteria Bacteria 160 7.289999999999999e-46   NR WP_027476351.1 230310 g20681 i0 88 1 92 11 100 0 276 1 233 324 WP_027476351.1 ATP-binding protein [Curvibacter gracilis] diamond 276 160 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Curvibacter Curvibacter gracilis
29513738 29513738 PRJNA690234_P_NODE_26770_length_250_cov_1.271186_g26403_i0 PRJNA690234 26770 250 1.271186 3.177965 Vibrio parahaemolyticus 670 Bacteria Bacteria 159 3.46e-45   NR HCH3385721.1 670 g26403 i0 94 0.996 83 5 99.6 0 1 249 65 147 HCH3385721.1 site-specific integrase [Vibrio parahaemolyticus] diamond 249 159 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus
29671441 29671441 PRJNA690234_P_NODE_30590_length_244_cov_0.912281_g30223_i0 PRJNA690234 30590 244 0.912281 2.22596564 Roseateles sp. 1971397 Bacteria Bacteria 157 5.38e-45   NR MBL8277042.1 1971397 g30223 i0 96.3 2.98770491803279 81 3 99.6 0 243 1 52 132 MBL8277042.1 phospholipase [Roseateles sp.] diamond 729 157 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles sp.
29777861 29777861 PRJNA690234_P_NODE_27371_length_249_cov_0.954545_g27004_i0 PRJNA690234 27371 249 0.954545 2.37681705 Terricaulis 2768684 Bacteria Bacteria 48.5 3.44e-4   NR GAN00485.1 1605283 g27004 i0 40.8 5.36144578313253 49 29 59 0 102 248 2 50 GAN00485.1 uncharacterized conserved protein [alpha proteobacterium U9-1i] diamond 1335 48.9 0.991820040899796 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       alpha proteobacterium U9-1i
29936015 29936015 PRJNA690234_P_NODE_25491_length_252_cov_1.720670_g25124_i0 PRJNA690234 25491 252 1.72067 4.3360884 Massilia 149698 Bacteria Bacteria 89.7 2.41e-19   NR MEO7497535.1 1882437 g25124 i0 59.7 4.27380952380952 72 29 85.7 0 219 4 1 72 MEO7497535.1 DNA-3-methyladenine glycosylase 2 [Massilia sp.] diamond 1077 90.5 0.991160220994475 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp.
30113911 30113911 PRJNA690234_P_NODE_30032_length_245_cov_0.906977_g29665_i0 PRJNA690234 30032 245 0.906977 2.22209365 Methylibium sp. 2067992 Bacteria Bacteria 139 9.29e-37   NR MBA4216681.1 2067992 g29665 i0 100 0.857142857142857 70 0 85.7 0 243 34 455 524 MBA4216681.1 6-aminohexanoate hydrolase [Methylibium sp.] diamond 210 139 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Methylibium Methylibium sp.
30367180 30367180 PRJNA690234_P_NODE_26072_length_251_cov_1.747191_g25705_i0 PRJNA690234 26072 251 1.747191 4.38544941 Alkanindiges illinoisensis 197183 Bacteria Bacteria 99 2.3e-25   NR WP_026469856.1 197183 g25705 i0 95.3 1.00398406374502 43 2 51.4 0 251 123 12 54 WP_026469856.1 rubredoxin [Alkanindiges illinoisensis] diamond 252 99 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Alkanindiges Alkanindiges illinoisensis
30777567 30777567 PRJNA690234_P_NODE_31934_length_242_cov_0.923077_g31567_i0 PRJNA690234 31934 242 0.923077 2.23384634 Limnohabitans sp. 1907725 Bacteria Bacteria 105 2.21e-24   NR WP_310643720.1 1907725 g31567 i0 65.8 0.979338842975207 79 27 97.9 0 4 240 59 137 WP_310643720.1 type IV conjugative transfer system coupling protein TraD [Limnohabitans sp.] diamond 237 105 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp.
31156293 31156293 PRJNA690234_P_NODE_13495_length_345_cov_1.147059_g13128_i0 PRJNA690234 13495 345 1.147059 3.95735355 Francisella 262 Bacteria Bacteria 42.7 0.0283   NR WP_071629259.1 262 g13128 i0 45.3 0.460869565217391 53 27 46.1 1 343 185 41 91 WP_071629259.1 MULTISPECIES: hypothetical protein [Francisella] diamond 159 42.7 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella  
31156298 31156298 PRJNA690234_P_NODE_21775_length_272_cov_1.366834_g21408_i0 PRJNA690234 21775 272 1.366834 3.71778848 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 42 0.0278   NR WP_395586667.1 251699 g21408 i0 40.8 0.838235294117647 76 31 71.7 6 204 10 36 108 WP_395586667.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] diamond 228 42 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7
31219497 31219497 PRJNA690234_P_NODE_11815_length_370_cov_0.932660_g11449_i0 PRJNA690234 11815 370 0.93266 3.450842 Neptunomonas antarctica 619304 Bacteria Bacteria 159 6.05e-44   NR WP_054343391.1 619304 g11449 i0 64.2 12.8675675675676 123 44 99.7 0 370 2 185 307 WP_054343391.1 betaine-aldehyde dehydrogenase [Neptunomonas antarctica] diamond 4761 159 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Neptunomonas Neptunomonas antarctica
31378093 31378093 PRJNA690234_P_NODE_25076_length_253_cov_0.866667_g24709_i0 PRJNA690234 25076 253 0.866667 2.19266751 Mesorhizobium sp. 1871066 Bacteria Bacteria 70.5 9.17e-13   NR WP_287118812.1 1871066 g24709 i0 85 0.474308300395257 40 6 47.4 0 246 127 143 182 WP_287118812.1 hypothetical protein [Mesorhizobium sp.] diamond 120 70.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp.
31409664 31409664 PRJNA690234_P_NODE_17896_length_300_cov_1.132159_g17529_i0 PRJNA690234 17896 300 1.132159 3.396477 Halomonas sp. 54_146 1635257 Bacteria Bacteria 44.7 0.012   NR KUJ88142.1 1635257 g17529 i0 36.5 0.74 74 42 71 3 282 70 77 148 KUJ88142.1 MAG: hypothetical protein XD36_1354 [Halomonas sp. 54_146] diamond 222 44.7 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. 54_146
31441165 31441165 PRJNA690234_P_NODE_11796_length_370_cov_1.542088_g11430_i0 PRJNA690234 11796 370 1.542088 5.7057256 Methylobacterium radiotolerans 31998 Bacteria Bacteria 194 2.3300000000000007e-59   NR WP_076728712.1 31998 g11430 i0 82.3 1.00540540540541 124 18 98.9 2 5 370 8 129 WP_076728712.1 TrbG/VirB9 family P-type conjugative transfer protein [Methylobacterium radiotolerans] diamond 372 194 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium radiotolerans
31547783 31547783 PRJNA690234_P_NODE_30936_length_243_cov_1.129412_g30569_i0 PRJNA690234 30936 243 1.129412 2.74447116 Pseudomonadati 3379134 Bacteria Bacteria 59.3 1.48e-8   NR MDC0059419.1 2026775 g30569 i0 44.9 2.69135802469136 69 36 85.2 1 207 1 3 69 MDC0059419.1 cyclic pyranopterin monophosphate synthase MoaC [Pelagibacteraceae bacterium] diamond 654 59.7 0.993299832495812 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae   Pelagibacteraceae bacterium
31820652 31820652 PRJNA690234_P_NODE_29997_length_245_cov_0.906977_g29630_i0 PRJNA690234 29997 245 0.906977 2.22209365 Xanthobacteraceae bacterium 2021379 Bacteria Bacteria 75.5 1.59e-14   NR HLH88137.1 2021379 g29630 i0 59 0.746938775510204 61 22 71 1 244 71 1 61 HLH88137.1 class I SAM-dependent methyltransferase [Xanthobacteraceae bacterium] diamond 183 75.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae   Xanthobacteraceae bacterium
31863721 31863721 PRJNA690234_P_NODE_32657_length_229_cov_2.301282_g32290_i0 PRJNA690234 32657 229 2.301282 5.26993578 root 1 Root_unresolved Root_unresolved 99.4 3.99e-24   NR WP_371902969.1 573 g32290 i0 82 33.1572052401747 61 11 79.9 0 184 2 15 75 WP_371902969.1 ADP-ribosylation factor-like protein, partial [Klebsiella pneumoniae] diamond 7593 99.4 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
32010646 32010646 PRJNA690234_P_NODE_12418_length_360_cov_0.860627_g12051_i0 PRJNA690234 12418 360 0.860627 3.0982572 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 44.3 0.0155   NR WP_395588397.1 251699 g12051 i0 39 0.683333333333333 82 30 65.8 4 58 294 64 128 WP_395588397.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] diamond 246 44.3 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7
32169059 32169059 PRJNA690234_P_NODE_22558_length_267_cov_1.608247_g22191_i0 PRJNA690234 22558 267 1.608247 4.29401949 Sulfitobacter sp. SK 1903071 Bacteria Bacteria 114 2.16e-28   NR WP_114878728.1 1389004 g22191 i0 52.3 2.79775280898876 88 40 98.9 1 265 2 134 219 WP_114878728.1 UDP-glucose--hexose-1-phosphate uridylyltransferase [Sulfitobacter sp. SK011] diamond 747 114 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. SK011
32169061 32169061 PRJNA690234_P_NODE_26578_length_251_cov_0.876404_g26211_i0 PRJNA690234 26578 251 0.876404 2.19977404 Klebsiella pneumoniae 573 Bacteria Bacteria 42 0.00852   NR MCP6508446.1 573 g26211 i0 57.1 0.418326693227092 35 14 40.6 1 56 157 16 50 MCP6508446.1 hypothetical protein [Klebsiella pneumoniae] diamond 105 42 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
32232392 32232392 PRJNA690234_P_NODE_7378_length_474_cov_0.937656_g7012_i0 PRJNA690234 7378 474 0.937656 4.44448944 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 47 0.0128   NR MDC3024025.1 1913988 g7012 i0 26.4 0.886075949367089 140 92 88 3 422 6 783 912 MDC3024025.1 DUF3971 domain-containing protein [Alphaproteobacteria bacterium] diamond 420 47 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
32390348 32390348 PRJNA690234_P_NODE_31699_length_242_cov_0.923077_g31332_i0 PRJNA690234 31699 242 0.923077 2.23384634 Polynucleobacter rarus 556055 Bacteria Bacteria 52.4 4.58e-6   NR WP_245898434.1 556055 g31332 i0 46.7 1.01652892561983 45 24 55.8 0 136 2 1 45 WP_245898434.1 tRNA adenosine(34) deaminase TadA [Polynucleobacter rarus] diamond 246 52.4 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter rarus
32642787 32642787 PRJNA690234_P_NODE_19620_length_286_cov_2.023474_g19253_i0 PRJNA690234 19620 286 2.023474 5.78713564 Halomonas sp. ISL-56 2819149 Bacteria Bacteria 77.8 3.76e-15   NR WP_215090480.1 2819149 g19253 i0 45.8 9.75524475524475 72 39 75.5 0 222 7 1 72 WP_215090480.1 adenylate kinase [Halomonas sp. ISL-56] diamond 2790 77.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. ISL-56
32863461 32863461 PRJNA690234_P_NODE_32360_length_235_cov_2.512346_g31993_i0 PRJNA690234 32360 235 2.512346 5.9040131 Vibrio splendidus 29497 Bacteria Bacteria 45.4 0.00373   NR WP_102511272.1 29497 g31993 i0 28.2 2.71914893617021 71 51 90.6 0 23 235 184 254 WP_102511272.1 hypothetical protein [Vibrio splendidus] diamond 639 45.4 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;