RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA690234" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA690234 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15973152 15973152 PRJNA690234_P_NODE_4273_length_635_cov_5.056940_g3916_i0 PRJNA690234 4273 635 5.05694 32.111569 Heterostelium album PN5 2086695 Evosea other_Eukaryota 310 7.44e-105   NR XP_020430508.1 670386 g3916 i0 74.5 4.5496062992126 192 49 90.7 0 576 1 1 192 XP_020430508.1 Rho GTPase [Heterostelium album PN500] diamond 2889 310 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
30304052 30304052 PRJNA690234_P_NODE_8392_length_443_cov_1.164865_g8026_i0 PRJNA690234 8392 443 1.164865 5.16035195 Heterostelium album PN5 2086695 Evosea other_Eukaryota 67 1.03e-10   NR XP_020432358.1 670386 g8026 i0 52.5 0.413092550790068 61 29 41.3 0 184 2 41 101 XP_020432358.1 ribosomal protein L21 [Heterostelium album PN500] diamond 183 67 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
32611610 32611610 PRJNA690234_P_NODE_12400_length_360_cov_1.087108_g12033_i0 PRJNA690234 12400 360 1.087108 3.9135888 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 58.9 2.91e-7   NR XP_646231.1 352472 g12033 i0 41.3 0.525 63 37 52.5 0 3 191 90 152 XP_646231.1 ABC transporter G family protein [Dictyostelium discoideum AX4] diamond 189 58.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;