RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA690124" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA690124 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27093798 27093798 PRJNA690124_P_NODE_51362_length_246_cov_0.901734_g50996_i0 PRJNA690124 51362 246 0.901734 2.21826564 Thermoproteati 1783275 Archaea Archaea 148 2.8999999999999996e-42   NR MDQ3718863.1 2056631 g50996 i0 94.9 3.80487804878049 78 4 95.1 0 2 235 188 265 MDQ3718863.1 type I 3-dehydroquinate dehydratase [Thermoproteota archaeon] diamond 936 148 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27662672 27662672 PRJNA690124_P_NODE_56004_length_242_cov_0.923077_g55638_i0 PRJNA690124 56004 242 0.923077 2.23384634 Thermoproteati 1783275 Archaea Archaea 168 4.92e-50   NR MDQ4016004.1 2056631 g55638 i0 97.5 1.98347107438017 80 2 99.2 0 1 240 126 205 MDQ4016004.1 galactose-1-phosphate uridylyltransferase [Thermoproteota archaeon] diamond 480 169 0.994082840236686 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
29198315 29198315 PRJNA690124_P_NODE_43649_length_253_cov_0.866667_g43283_i0 PRJNA690124 43649 253 0.866667 2.19266751 Thermoproteota archaeon 2056631 Archaea Archaea 42.7 0.0138   NR MDQ4016042.1 2056631 g43283 i0 95 0.474308300395257 20 1 23.7 0 252 193 99 118 MDQ4016042.1 cupin domain-containing protein [Thermoproteota archaeon] diamond 120 42.7 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;