RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA690124" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA690124 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27840281 27840281 PRJNA690124_P_NODE_48984_length_248_cov_0.891429_g48618_i0 PRJNA690124 48984 248 0.891429 2.21074392 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 98.6 3.81e-24   NR PRP82916.1 1890364 g48618 i0 73.8 1.4758064516129 61 16 73.8 0 187 5 28 88 PRP82916.1 putative 60S ribosomal protein L22 [Planoprotostelium fungivorum] diamond 366 98.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30650842 30650842 PRJNA690124_P_NODE_55773_length_242_cov_0.923077_g55407_i0 PRJNA690124 55773 242 0.923077 2.23384634 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 109 2.17e-28   NR PRP75136.1 1890364 g55407 i0 61.3 0.991735537190083 80 30 99.2 1 2 241 2 80 PRP75136.1 ubiquitin-conjugating enzyme E2 [Planoprotostelium fungivorum] diamond 240 109 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;