RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA689790" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA689790 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18520807 18520807 PRJNA689790_S_NODE_4415_length_289_cov_1.444444_g4300_i0 PRJNA689790 4415 289 1.444444 4.17444316 Chlamydiae bacterium CG1 2081524 Bacteria Bacteria 162 1.46e-44   NR PIS01825.1 1973935 g4300 i0 76 0.996539792387543 96 23 99.7 0 288 1 276 371 PIS01825.1 MAG: phosphoenolpyruvate carboxykinase (GTP) [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9] diamond 288 162 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9
32073876 32073876 PRJNA689790_S_NODE_13278_length_165_cov_1.062500_g13163_i0 PRJNA689790 13278 165 1.0625 1.753125 Parachlamydia sp. AcF125 2795736 Bacteria Bacteria 68.6 1e-11   NR WP_213157304.1 2795736 g13163 i0 53.7 0.981818181818182 54 25 98.2 0 2 163 3165 3218 WP_213157304.1 hypothetical protein [Parachlamydia sp. AcF125] diamond 162 68.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp. AcF125

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;