RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA689790" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA689790 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26670559 26670559 PRJNA689790_S_NODE_6461_length_235_cov_1.575758_g6346_i0 PRJNA689790 6461 235 1.575758 3.7030313 Trueperaceae bacterium 2026798 Bacteria Bacteria 69.7 7.1e-12   NR MFO7543970.1 2026798 g6346 i0 61.7 2.2468085106383 60 21 75.3 2 225 49 84 142 MFO7543970.1 oxidoreductase [Trueperaceae bacterium] diamond 528 69.7 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
28156381 28156381 PRJNA689790_S_NODE_11325_length_177_cov_1.100000_g11210_i0 PRJNA689790 11325 177 1.1 1.947 Aminobacterium 81466 Bacteria Bacteria 41.6 0.0379   NR WP_286934164.1 81466 g11210 i0 42.6 1.55932203389831 47 27 79.7 0 146 6 12 58 WP_286934164.1 MULTISPECIES: formate/nitrite transporter family protein [Aminobacterium] diamond 276 41.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium  
28925331 28925331 PRJNA689790_S_NODE_10548_length_183_cov_1.068493_g10433_i0 PRJNA689790 10548 183 1.068493 1.95534219 PVC group 1783257 Bacteria Bacteria 60.8 6.71e-9   NR WP_318773950.1 1955249 g10433 i0 62.5 8.22950819672131 56 20 90.2 1 14 178 687 742 WP_318773950.1 Ig-like domain-containing protein, partial [Meiothermus sp.] diamond 1506 60.8 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp.
29797934 29797934 PRJNA689790_S_NODE_8791_length_199_cov_1.925926_g8676_i0 PRJNA689790 8791 199 1.925926 3.83259274 Synergistales bacterium 2268201 Bacteria Bacteria 66.2 8.19e-11   NR MDD4364172.1 2268201 g8676 i0 51.5 1.98994974874372 66 32 99.5 0 2 199 58 123 MDD4364172.1 carbamate kinase [Synergistales bacterium] diamond 396 66.2 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium
31093397 31093397 PRJNA689790_S_NODE_4975_length_271_cov_2.290598_g4860_i0 PRJNA689790 4975 271 2.290598 6.20752058 Deinococcus arenicola 2994950 Bacteria Bacteria 53.9 5.61e-6   NR WP_317639123.1 2994950 g4860 i0 49.2 2.97785977859779 59 27 65.3 1 270 94 262 317 WP_317639123.1 leishmanolysin-related zinc metalloendopeptidase [Deinococcus arenicola] diamond 807 53.9 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus arenicola
32022133 32022133 PRJNA689790_S_NODE_16778_length_150_cov_2.070796_g16663_i0 PRJNA689790 16778 150 2.070796 3.106194 Bacteria 2 Bacteria Bacteria 70.1 2.38e-12   NR WP_211317990.1 309889 g16663 i0 61.2 10.4 49 19 98 0 150 4 173 221 WP_211317990.1 putative Ig domain-containing protein, partial [Deinococcus yavapaiensis] diamond 1560 70.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yavapaiensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;