RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA688931" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688931 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27978196 27978196 PRJNA688931_P_NODE_44405_length_156_cov_4.766355_g44192_i0 PRJNA688931 44405 156 4.766355 7.4355138 Nitrososphaera 497726 Archaea Archaea 64.7 1.32e-11   NR HEX2170328.1 1971748 g44192 i0 61.9 16 42 16 80.8 0 27 152 3 44 HEX2170328.1 4Fe-4S binding protein [Nitrososphaera sp.] diamond 2496 64.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
31863699 31863699 PRJNA688931_P_NODE_34777_length_170_cov_1.264463_g34564_i0 PRJNA688931 34777 170 1.264463 2.1495871 Nitrososphaeria 1643678 Archaea Archaea 68.6 1.04e-11   NR HVX03416.1 1971748 g34564 i0 63 9.49411764705882 54 20 95.3 0 166 5 102 155 HVX03416.1 aldo/keto reductase [Nitrososphaera sp.] diamond 1614 68.9 0.995645863570392 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;