RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA688931" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA688931 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27682863 27682863 PRJNA688931_P_NODE_21884_length_219_cov_1.017647_g21671_i0 PRJNA688931 21884 219 1.017647 2.22864693 SAR324 cluster bacterium 2024889 Bacteria Bacteria 47 8.35e-4   NR MEC7166297.1 2024889 g21671 i0 50 1.3972602739726 52 24 71.2 2 2 157 200 249 MEC7166297.1 Ig-like domain-containing protein [SAR324 cluster bacterium] diamond 306 47 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
29809406 29809406 PRJNA688931_P_NODE_24211_length_208_cov_1.264151_g23998_i0 PRJNA688931 24211 208 1.264151 2.62943408 root 1 Root_unresolved Root_unresolved 57 2.23e-7   NR EFK09763.1 88274 g23998 i0 42.4 1.84615384615385 59 34 85.1 0 28 204 281 339 EFK09763.1 GAF domain protein [delta proteobacterium NaphS2] diamond 384 57 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium NaphS2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;