RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA688736" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA688736 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27398457 27398457 PRJNA688736_P_NODE_49243_length_243_cov_1.429412_g48958_i0 PRJNA688736 49243 243 1.429412 3.47347116 Acrasis kona 1008807 Heterolobosea other_Eukaryota 78.6 8.68e-15   NR KAL0484970.1 1008807 g48958 i0 43.6 0.962962962962963 78 41 96.3 2 2 235 229 303 KAL0484970.1 BRCA1-associated protein [Acrasis kona] diamond 234 78.6 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29671296 29671296 PRJNA688736_P_NODE_41130_length_252_cov_0.871508_g40845_i0 PRJNA688736 41130 252 0.871508 2.19620016 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 76.6 4.83e-14   NR XP_002682656.1 5762 g40845 i0 44 2.78571428571429 84 47 100 0 252 1 119 202 XP_002682656.1 uncharacterized protein NAEGRDRAFT_29590 [Naegleria gruberi] diamond 702 76.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;