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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA688736" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688736 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21070473 21070473 PRJNA688736_P_NODE_42897_length_250_cov_0.881356_g42612_i0 PRJNA688736 42897 250 0.881356 2.20339 Metazoa 33208 Chordata Chordata 141 6.78e-41   NR XP_002131089.1 7719 g42612 i0 79.5 39.816 83 17 99.6 0 2 250 65 147 XP_002131089.1 40S ribosomal protein S18 [Ciona intestinalis] diamond 9954 141 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
27536238 27536238 PRJNA688736_P_NODE_50643_length_242_cov_0.923077_g50358_i0 PRJNA688736 50643 242 0.923077 2.23384634 root 1 Root_unresolved Root_unresolved 127 6.830000000000001e-33   NR XP_064412019.1 7897 g50358 i0 72.5 14.8760330578512 80 22 99.2 0 241 2 14 93 XP_064412019.1 acetyl-CoA acetyltransferase, cytosolic [Latimeria chalumnae] diamond 3600 127 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
27809021 27809021 PRJNA688736_P_NODE_12224_length_432_cov_0.869081_g11939_i0 PRJNA688736 12224 432 0.869081 3.75442992 Felis catus 9685 Chordata Chordata 45.1 0.034   NR XP_023109457.2 9685 g11939 i0 41 2.3125 83 45 55.6 2 23 262 194 275 XP_023109457.2 p21-activated protein kinase-interacting protein 1 isoform X2 [Felis catus] diamond 999 45.4 0.993392070484582 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Felis Felis catus
28693056 28693056 PRJNA688736_P_NODE_10747_length_457_cov_2.039062_g10462_i0 PRJNA688736 10747 457 2.039062 9.31851334 Branchiostoma belcheri 7741 Chordata Chordata 67 9.38e-10   NR XP_019642806.1 7741 g10462 i0 63 1.15536105032823 54 20 35.4 0 294 455 288 341 XP_019642806.1 PREDICTED: cyclic AMP-dependent transcription factor ATF-5-like [Branchiostoma belcheri] diamond 528 67 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29241222 29241222 PRJNA688736_P_NODE_40789_length_252_cov_0.871508_g40504_i0 PRJNA688736 40789 252 0.871508 2.19620016 Chondrichthyes 7777 Chordata Chordata 53.5 6.41e-6   NR XP_048468291.1 259920 g40504 i0 38.2 1.80952380952381 76 47 90.5 0 18 245 459 534 XP_048468291.1 transient receptor potential cation channel subfamily V member 3 [Rhincodon typus] diamond 456 53.9 0.992578849721707 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Rhincodontidae Rhincodon Rhincodon typus
29525469 29525469 PRJNA688736_P_NODE_5710_length_608_cov_1.547664_g5432_i0 PRJNA688736 5710 608 1.547664 9.40979712 Aves 8782 Chordata Chordata 216 4.63e-68   NR XP_043921494.1 7888 g5432 i0 84.2 27.375 133 18 65.1 2 527 132 55 185 XP_043921494.1 40S ribosomal protein S20 [Protopterus annectens] diamond 16644 216 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
29999183 29999183 PRJNA688736_P_NODE_43751_length_249_cov_0.886364_g43466_i0 PRJNA688736 43751 249 0.886364 2.20704636 Chordata 7711 Chordata Chordata 102 3.33e-23   NR XP_069511342.1 8296 g43466 i0 58.8 28.9156626506024 80 33 96.4 0 248 9 459 538 XP_069511342.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Ambystoma mexicanum] diamond 7200 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
30398720 30398720 PRJNA688736_P_NODE_41553_length_251_cov_1.314607_g41268_i0 PRJNA688736 41553 251 1.314607 3.29966357 Erythrolamprus reginae 121349 Chordata Chordata 66.6 1.56e-10   NR XP_070613747.1 121349 g41268 i0 63 0.549800796812749 46 17 55 0 175 38 2 47 XP_070613747.1 uncharacterized protein [Erythrolamprus reginae] diamond 138 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dipsadidae Erythrolamprus Erythrolamprus reginae
30998596 30998596 PRJNA688736_P_NODE_44994_length_248_cov_0.891429_g44709_i0 PRJNA688736 44994 248 0.891429 2.21074392 Branchiostoma floridae 7739 Chordata Chordata 75.5 1.35e-14   NR XP_035678594.1 7739 g44709 i0 66.2 0.786290322580645 65 22 78.6 0 26 220 45 109 XP_035678594.1 CCAAT/enhancer-binding protein beta-like [Branchiostoma floridae] diamond 195 75.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31346341 31346341 PRJNA688736_P_NODE_45556_length_247_cov_0.896552_g45271_i0 PRJNA688736 45556 247 0.896552 2.21448344 Branchiostoma floridae 7739 Chordata Chordata 84.7 3.49e-19   NR XP_035680439.1 7739 g45271 i0 61 0.716599190283401 59 23 71.7 0 179 3 20 78 XP_035680439.1 bolA-like protein 3 [Branchiostoma floridae] diamond 177 84.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31630836 31630836 PRJNA688736_P_NODE_49696_length_243_cov_0.917647_g49411_i0 PRJNA688736 49696 243 0.917647 2.22988221 Branchiostoma belcheri 7741 Chordata Chordata 65.9 1.26e-10   NR XP_019614110.1 7741 g49411 i0 46.6 1.08641975308642 88 21 76.5 2 242 57 52 139 XP_019614110.1 PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 7-like [Branchiostoma belcheri] diamond 264 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
31694108 31694108 PRJNA688736_P_NODE_32117_length_283_cov_1.361905_g31832_i0 PRJNA688736 32117 283 1.361905 3.85419115 Engystomops pustulosus 76066 Chordata Chordata 41.6 0.0282   NR KAG8536372.1 76066 g31832 i0 38.2 0.720848056537102 68 31 67.8 3 88 279 6 66 KAG8536372.1 hypothetical protein GDO81_026503 [Engystomops pustulosus] diamond 204 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
32453750 32453750 PRJNA688736_P_NODE_30919_length_288_cov_1.451163_g30634_i0 PRJNA688736 30919 288 1.451163 4.17934944 Latimeria chalumnae 7897 Chordata Chordata 68.2 2.99e-11   NR XP_006011442.1 7897 g30634 i0 37.6 4.8125 93 57 96.9 1 288 10 154 245 XP_006011442.1 probable thiopurine S-methyltransferase isoform X2 [Latimeria chalumnae] diamond 1386 68.2 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
32768792 32768792 PRJNA688736_P_NODE_14480_length_401_cov_3.176829_g14195_i0 PRJNA688736 14480 401 3.176829 12.73908429 Camelus ferus 419612 Chordata Chordata 196 2.85e-62   NR EQB77764.1 419612 g14195 i0 87.2 53.0349127182045 109 14 81.5 0 12 338 1 109 EQB77764.1 40S ribosomal protein S26 [Camelus ferus] diamond 21267 196 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus ferus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;