RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA688736" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688736 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5771555 5771555 PRJNA688736_P_NODE_38565_length_257_cov_1.309783_g38280_i0 PRJNA688736 38565 257 1.309783 3.36614231 Actinomycetales bacterium 1911520 Bacteria Bacteria 114 3.22e-30   NR NLI17885.1 1911520 g38280 i0 78.9 1.68093385214008 71 15 82.9 0 1 213 73 143 NLI17885.1 PH domain-containing protein [Actinomycetales bacterium] diamond 432 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales     Actinomycetales bacterium
26765791 26765791 PRJNA688736_P_NODE_34781_length_272_cov_1.090452_g34496_i0 PRJNA688736 34781 272 1.090452 2.96602944 Catellatospora sp. TT 54104 Bacteria Bacteria 42.7 0.0451   NR WP_212830149.1 2733863 g34496 i0 34.5 0.926470588235294 84 46 87.1 4 257 21 8 87 WP_212830149.1 hypothetical protein [Catellatospora sp. TT07R-123] diamond 252 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Catellatospora Catellatospora sp. TT07R-123
27682837 27682837 PRJNA688736_P_NODE_44104_length_249_cov_0.886364_g43819_i0 PRJNA688736 44104 249 0.886364 2.20704636 unclassified Rhodococcus (in: high G+C Gram-positive bacteria) 192944 Bacteria Bacteria 154 2.27e-41   NR WP_094638973.1 192944 g43819 i0 96.3 0.987951807228916 82 3 98.8 0 248 3 122 203 WP_094638973.1 MULTISPECIES: LuxR C-terminal-related transcriptional regulator [unclassified Rhodococcus (in: high G+C Gram-positive bacteria)] diamond 246 154 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus  
27966590 27966590 PRJNA688736_P_NODE_39225_length_255_cov_1.010989_g38940_i0 PRJNA688736 39225 255 1.010989 2.57802195 Arthrobacter citreus 1670 Bacteria Bacteria 59.3 4.88e-8   NR WP_376934700.1 1670 g38940 i0 100 0.329411764705882 28 0 32.9 0 1 84 259 286 WP_376934700.1 hypothetical protein [Arthrobacter citreus] diamond 84 59.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter citreus
29481923 29481923 PRJNA688736_P_NODE_910_length_1293_cov_43.992623_g790_i0 PRJNA688736 910 1293 43.992623 568.82461539 Arthrobacter citreus 1670 Bacteria Bacteria 539 2.2399999999999998e-190   NR WP_376934700.1 1670 g790 i0 100 0.663573085846868 286 0 66.4 0 228 1085 1 286 WP_376934700.1 hypothetical protein [Arthrobacter citreus] diamond 858 539 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter citreus
30145150 30145150 PRJNA688736_P_NODE_42012_length_251_cov_0.876404_g41727_i0 PRJNA688736 42012 251 0.876404 2.19977404 Actinomycetota bacterium 2900548 Bacteria Bacteria 113 6.870000000000001e-27   NR MDQ3894990.1 2900548 g41727 i0 67.5 0.99203187250996006 83 26 99.2 1 251 3 254 335 MDQ3894990.1 beta-propeller fold lactonase family protein [Actinomycetota bacterium] diamond 249 113 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30998597 30998597 PRJNA688736_P_NODE_94_length_2271_cov_12.526388_g77_i0 PRJNA688736 94 2271 12.526388 284.47427148 Arthrobacter citreus 1670 Bacteria Bacteria 176 1.69e-48   NR WP_376934692.1 1670 g77 i0 100 0.121532364597094 92 0 12.2 0 697 422 1 92 WP_376934692.1 hypothetical protein, partial [Arthrobacter citreus] diamond 276 176 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter citreus
31156179 31156179 PRJNA688736_P_NODE_75_length_2358_cov_20.123851_g64_i0 PRJNA688736 75 2358 20.123851 474.52040658 Arthrobacter citreus 1670 Bacteria Bacteria 823 9.05e-295   NR WP_376934698.1 1670 g64 i0 100 0.517811704834606 407 0 51.8 0 1010 2230 1 407 WP_376934698.1 hypothetical protein, partial [Arthrobacter citreus] diamond 1221 823 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter citreus
31852192 31852192 PRJNA688736_P_NODE_7357_length_542_cov_2.515991_g7075_i0 PRJNA688736 7357 542 2.515991 13.63667122 Arthrobacter citreus 1670 Bacteria Bacteria 79.7 3.23e-14   NR WP_376934700.1 1670 g7075 i0 36.3 0.808118081180812 146 90 80.3 2 507 73 117 260 WP_376934700.1 hypothetical protein [Arthrobacter citreus] diamond 438 79.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter citreus
32073811 32073811 PRJNA688736_P_NODE_45858_length_247_cov_0.896552_g45573_i0 PRJNA688736 45858 247 0.896552 2.21448344 Lancefieldella parvula 1382 Bacteria Bacteria 159 1.15e-43   NR WP_314950448.1 1382 g45573 i0 92.7 2.98785425101215 82 6 99.6 0 2 247 42 123 WP_314950448.1 class I SAM-dependent DNA methyltransferase [Lancefieldella parvula] diamond 738 159 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales Atopobiaceae Lancefieldella Lancefieldella parvula
32496841 32496841 PRJNA688736_P_NODE_50019_length_243_cov_0.917647_g49734_i0 PRJNA688736 50019 243 0.917647 2.22988221 root 1 Root_unresolved Root_unresolved 90.9 8.200000000000001e-22   NR WP_285164290.1 1773 g49734 i0 62.7 19.1604938271605 75 27 91.4 1 224 3 15 89 WP_285164290.1 glutathione S-transferase N-terminal domain-containing protein, partial [Mycobacterium tuberculosis] diamond 4656 91.7 0.991275899672846 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;