RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA688736" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688736 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18519551 18519551 PRJNA688736_P_NODE_2015_length_948_cov_1.934857_g1831_i0 PRJNA688736 2015 948 1.934857 18.34244436 Pseudomonadati 3379134 Bacteria Bacteria 138 3.18e-32   NR PYX61602.1 1978231 g1831 i0 57.4 0.604430379746835 115 49 36.4 0 904 560 873 987 PYX61602.1 MAG: hypothetical protein DMG74_22350, partial [Acidobacteriota bacterium] diamond 573 139 0.992805755395683 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28187443 28187443 PRJNA688736_P_NODE_13886_length_409_cov_0.866071_g13601_i0 PRJNA688736 13886 409 0.866071 3.54223039 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 44.7 0.0421   NR MEO7793186.1 2651171 g13601 i0 31.7 0.601466992665037 82 49 55.7 2 69 296 119 199 MEO7793186.1 apolipoprotein N-acyltransferase [Thermoanaerobaculia bacterium] diamond 246 44.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
29639799 29639799 PRJNA688736_P_NODE_37190_length_262_cov_1.650794_g36905_i0 PRJNA688736 37190 262 1.650794 4.32508028 Terriglobales bacterium 2282142 Bacteria Bacteria 71.2 2.15e-12   NR HEX3104862.1 2282142 g36905 i0 50 0.778625954198473 68 34 77.9 0 6 209 4 71 HEX3104862.1 DUF4238 domain-containing protein [Terriglobales bacterium] diamond 204 71.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
31883855 31883855 PRJNA688736_P_NODE_28437_length_299_cov_2.238938_g28152_i0 PRJNA688736 28437 299 2.238938 6.69442462 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 43.1 0.0432   NR HUI56417.1 2212468 g28152 i0 38.9 0.54180602006689 54 31 54.2 1 172 11 33 84 HUI56417.1 hypothetical protein [Bryobacteraceae bacterium] diamond 162 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;