RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA688655" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA688655 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22344518 22344518 PRJNA688655_P_NODE_3238_length_338_cov_1.875472_g3173_i0 PRJNA688655 3238 338 1.875472 6.33909536 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 154 1.47e-45   NR XP_004341446.1 1257118 g3173 i0 83.5 1.6508875739645 91 15 80.8 0 326 54 61 151 XP_004341446.1 core histone h2a/h2b/h3/h4 superfamily protein [Acanthamoeba castellanii str. Neff] diamond 558 154 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26924113 26924113 PRJNA688655_P_NODE_15462_length_242_cov_0.911243_g15397_i0 PRJNA688655 15462 242 0.911243 2.20520806 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 111 1.61e-26   NR XP_004339235.1 1257118 g15397 i0 67.1 0.942148760330578 76 25 94.2 0 241 14 462 537 XP_004339235.1 Signal transducer and activator of transcription STAT family protein [Acanthamoeba castellanii str. Neff] diamond 228 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27745872 27745872 PRJNA688655_P_NODE_15684_length_242_cov_0.911243_g15619_i0 PRJNA688655 15684 242 0.911243 2.20520806 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 134 1.39e-35   NR XP_004356673.1 1257118 g15619 i0 76.9 0.966942148760331 78 17 96.7 1 240 7 38 114 XP_004356673.1 actinrelated protein 2 isoform 4, putative [Acanthamoeba castellanii str. Neff] diamond 234 134 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32295636 32295636 PRJNA688655_P_NODE_7559_length_252_cov_1.474860_g7494_i0 PRJNA688655 7559 252 1.47486 3.7166472 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.5 7.35e-12   NR XP_004356787.1 1257118 g7494 i0 49.4 0.94047619047619 79 37 94 2 1 237 871 946 XP_004356787.1 IQGAPrelated protein [Acanthamoeba castellanii str. Neff] diamond 237 70.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;