RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA688655" and tax_phylum = "Atribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Atribacterota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688655 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1943234 1943234 PRJNA688655_P_NODE_8982_length_250_cov_0.870056_g8917_i0 PRJNA688655 8982 250 0.870056 2.17514 Candidatus Atribacteria bacterium 2053509 Bacteria Bacteria 172 2.04e-50   NR MBP9015366.1 2053509 g8917 i0 100 0.996 83 0 99.6 0 2 250 68 150 MBP9015366.1 extracellular solute-binding protein [Candidatus Atribacteria bacterium] diamond 249 172 1 Bacteria   Pseudomonadati Atribacterota Atribacteria       Candidatus Atribacteria bacterium
27303642 27303642 PRJNA688655_P_NODE_10923_length_247_cov_0.885057_g10858_i0 PRJNA688655 10923 247 0.885057 2.18609079 Candidatus Atribacteria bacterium 2053509 Bacteria Bacteria 153 1.33e-41   NR MDI3542989.1 2053509 g10858 i0 93.8 3.91093117408907 80 5 97.2 0 245 6 159 238 MDI3542989.1 hypothetical protein [Candidatus Atribacteria bacterium] diamond 966 153 1 Bacteria   Pseudomonadati Atribacterota Atribacteria       Candidatus Atribacteria bacterium
28314033 28314033 PRJNA688655_P_NODE_12926_length_245_cov_0.895349_g12861_i0 PRJNA688655 12926 245 0.895349 2.19360505 Atribacterota bacterium 2952890 Bacteria Bacteria 95.9 6.77e-21   NR MDI9594589.1 2952890 g12861 i0 58.8 2.95102040816327 80 33 98 0 4 243 89 168 MDI9594589.1 hypothetical protein [Atribacterota bacterium] diamond 723 95.9 1 Bacteria   Pseudomonadati Atribacterota         Atribacterota bacterium
28977162 28977162 PRJNA688655_P_NODE_16468_length_241_cov_0.916667_g16403_i0 PRJNA688655 16468 241 0.916667 2.20916747 Atribacter sp. 2847780 Bacteria Bacteria 95.1 3.27e-22   NR WP_324475638.1 2847780 g16403 i0 92.5 0.659751037344398 53 4 66 0 239 81 42 94 WP_324475638.1 phosphoribosylglycinamide formyltransferase [Atribacter sp.] diamond 159 95.1 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Atribacteraceae Atribacter Atribacter sp.
31820527 31820527 PRJNA688655_P_NODE_11237_length_247_cov_0.885057_g11172_i0 PRJNA688655 11237 247 0.885057 2.18609079 Candidatus Atribacteria bacterium 2053509 Bacteria Bacteria 152 4.5e-45   NR MDI3543488.1 2053509 g11172 i0 86.6 0.995951417004049 82 11 99.6 0 247 2 84 165 MDI3543488.1 epoxyqueuosine reductase [Candidatus Atribacteria bacterium] diamond 246 152 1 Bacteria   Pseudomonadati Atribacterota Atribacteria       Candidatus Atribacteria bacterium
31852181 31852181 PRJNA688655_P_NODE_8117_length_251_cov_0.865169_g8052_i0 PRJNA688655 8117 251 0.865169 2.17157419 Candidatus Atribacteria bacterium 2053509 Bacteria Bacteria 162 8.509999999999998e-47   NR MBP9015319.1 2053509 g8052 i0 100 0.99203187250996006 83 0 99.2 0 249 1 247 329 MBP9015319.1 hypothetical protein [Candidatus Atribacteria bacterium] diamond 249 162 1 Bacteria   Pseudomonadati Atribacterota Atribacteria       Candidatus Atribacteria bacterium
32022104 32022104 PRJNA688655_P_NODE_11798_length_246_cov_0.890173_g11733_i0 PRJNA688655 11798 246 0.890173 2.18982558 Candidatus Sordicultor 3378229 Bacteria Bacteria 155 5.1699999999999995e-45   NR WP_409376778.1 1953203 g11733 i0 92.6 3.95121951219512 81 6 98.8 0 245 3 101 181 WP_409376778.1 M55 family metallopeptidase, partial [Candidatus Sordicultor fermentans] diamond 972 155 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Candidatus Caldatribacteriaceae Candidatus Sordicultor Candidatus Sordicultor fermentans
32053662 32053662 PRJNA688655_P_NODE_11818_length_246_cov_0.890173_g11753_i0 PRJNA688655 11818 246 0.890173 2.18982558 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 70.1 7.91e-12   NR MDI3531135.1 2053509 g11753 i0 79.5 1.42682926829268 39 8 47.6 0 118 2 1 39 MDI3531135.1 D-arabinonate dehydratase [Candidatus Atribacteria bacterium] diamond 351 70.1 1 Bacteria   Pseudomonadati Atribacterota Atribacteria       Candidatus Atribacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;