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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA688655" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 13 ✖

bioproject 1

  • PRJNA688655 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8320238 8320238 PRJNA688655_P_NODE_11567_length_247_cov_0.885057_g11502_i0 PRJNA688655 11567 247 0.885057 2.18609079 Myxococcota 2818505 Bacteria Bacteria 99 1.2500000000000001e-22   NR OGP33838.1 1797820 g11502 i0 84.9 5.1497975708502 53 8 64.4 0 89 247 1 53 OGP33838.1 MAG: 3-oxoacyl-ACP synthase [Deltaproteobacteria bacterium GWC2_65_14] diamond 1272 99 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWC2_65_14
15969779 15969779 PRJNA688655_P_NODE_11113_length_247_cov_0.885057_g11048_i0 PRJNA688655 11113 247 0.885057 2.18609079 Deltaproteobacteria bacterium RBG_13_49_15 1797827 Bacteria Bacteria 94 1.91e-20   NR OGP62501.1 1797827 g11048 i0 54.3 5.96356275303644 81 37 98.4 0 5 247 22 102 OGP62501.1 MAG: hypothetical protein A2V65_08580 [Deltaproteobacteria bacterium RBG_13_49_15] diamond 1473 94 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_49_15
23619994 23619994 PRJNA688655_P_NODE_16139_length_241_cov_0.916667_g16074_i0 PRJNA688655 16139 241 0.916667 2.20916747 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6 2013756 Bacteria Bacteria 143 1.4999999999999999e-40   NR PKN20994.1 2013756 g16074 i0 90.5 3.68464730290456 74 7 92.1 0 2 223 172 245 PKN20994.1 MAG: hypothetical protein CVU71_04245 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6] diamond 888 143 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6
27587857 27587857 PRJNA688655_P_NODE_12444_length_246_cov_0.890173_g12379_i0 PRJNA688655 12444 246 0.890173 2.18982558 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22 2013750 Bacteria Bacteria 144 2.86e-40   NR PKN27844.1 2013750 g12379 i0 87.7 0.98780487804878 81 10 98.8 0 244 2 128 208 PKN27844.1 MAG: UTP--glucose-1-phosphate uridylyltransferase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22] diamond 243 144 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22
27745879 27745879 PRJNA688655_P_NODE_8104_length_251_cov_0.865169_g8039_i0 PRJNA688655 8104 251 0.865169 2.17157419 SAR324 cluster bacterium 2024889 Bacteria Bacteria 88.2 1.19e-18   NR NMC63969.1 2024889 g8039 i0 53.1 0.968127490039841 81 33 94.4 2 1 237 154 231 NMC63969.1 glycosyltransferase family 4 protein [SAR324 cluster bacterium] diamond 243 88.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
27903286 27903286 PRJNA688655_P_NODE_14905_length_243_cov_0.905882_g14840_i0 PRJNA688655 14905 243 0.905882 2.20129326 Deltaproteobacteria bacterium ADurb.Bin 2026735 Bacteria Bacteria 154 1.5e-45   NR OQC72862.1 1852862 g14840 i0 96.3 2 81 3 100 0 243 1 72 152 OQC72862.1 MAG: putative periplasmic serine endoprotease DegP-like precursor [Deltaproteobacteria bacterium ADurb.Bin002] diamond 486 154 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin002
28041446 28041446 PRJNA688655_P_NODE_8465_length_250_cov_0.870056_g8400_i0 PRJNA688655 8465 250 0.870056 2.17514 Myxococcota 2818505 Bacteria Bacteria 97.8 9.96e-23   NR OQC41215.1 1852865 g8400 i0 60.5 1.944 81 29 96 2 250 11 66 144 OQC41215.1 MAG: CDP-alcohol phosphatidyltransferase [Deltaproteobacteria bacterium ADurb.Bin058] diamond 486 97.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin058
28451977 28451977 PRJNA688655_P_NODE_13426_length_244_cov_0.900585_g13361_i0 PRJNA688655 13426 244 0.900585 2.1974274 Myxococcota 2818505 Bacteria Bacteria 52 2.08e-5   NR OIP38123.1 1805126 g13361 i0 65.8 1.79508196721311 38 13 46.7 0 235 122 117 154 OIP38123.1 MAG: hypothetical protein AUK47_12580 [Deltaproteobacteria bacterium CG2_30_63_29] diamond 438 52 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG2_30_63_29
29103476 29103476 PRJNA688655_P_NODE_5448_length_287_cov_1.079439_g5383_i0 PRJNA688655 5448 287 1.079439 3.09798993 Deltaproteobacteria bacterium ADurb.Bin 2026735 Bacteria Bacteria 190 1.6999999999999997e-56   NR OQC51018.1 1852864 g5383 i0 96.8 0.993031358885017 95 3 99.3 0 285 1 278 372 OQC51018.1 MAG: Archaeal ATPase [Deltaproteobacteria bacterium ADurb.Bin026] diamond 285 190 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin026
30113772 30113772 PRJNA688655_P_NODE_9532_length_249_cov_0.875000_g9467_i0 PRJNA688655 9532 249 0.875 2.17875 Bradymonadaceae bacterium 2740543 Bacteria Bacteria 57.8 2.11e-7   NR MFU8804319.1 2740543 g9467 i0 41.6 1.91566265060241 77 41 90.4 3 231 7 60 134 MFU8804319.1 PKD domain-containing protein [Bradymonadaceae bacterium] diamond 477 57.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium
31042012 31042012 PRJNA688655_P_NODE_8475_length_250_cov_0.870056_g8410_i0 PRJNA688655 8475 250 0.870056 2.17514 Chondromyces 50 Bacteria Bacteria 132 6.09e-35   NR OQB18964.1 1852869 g8410 i0 74.7 2.988 83 21 99.6 0 2 250 205 287 OQB18964.1 MAG: putative Ni/Fe-hydrogenase 2 b-type cytochrome subunit [Deltaproteobacteria bacterium ADurb.Bin207] diamond 747 133 0.992481203007519 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin207
31282859 31282859 PRJNA688655_P_NODE_10955_length_247_cov_0.885057_g10890_i0 PRJNA688655 10955 247 0.885057 2.18609079 Olavius sp. associated proteobacterium Delta 1 698986 Bacteria Bacteria 158 6.0799999999999986e-43   NR CAB1059744.1 698986 g10890 i0 94.8 0.935222672064777 77 4 93.5 0 233 3 1 77 CAB1059744.1 Anaerobic dimethyl sulfoxide reductase chain A (EC, molybdopterin-binding domain [Olavius sp. associated proteobacterium Delta 1] diamond 231 158 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius sp. associated proteobacterium Delta 1
32780226 32780226 PRJNA688655_P_NODE_14120_length_244_cov_0.900585_g14055_i0 PRJNA688655 14120 244 0.900585 2.1974274 Bacteria 2 Bacteria Bacteria 59.7 3.35e-8   NR MBL4824156.1 2024889 g14055 i0 71.1 1.86885245901639 38 11 46.7 0 242 129 276 313 MBL4824156.1 sigma-54-dependent Fis family transcriptional regulator [SAR324 cluster bacterium] diamond 456 59.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;