RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA688655" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 9 ✖

bioproject 1

  • PRJNA688655 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26607260 26607260 PRJNA688655_P_NODE_8941_length_250_cov_0.870056_g8876_i0 PRJNA688655 8941 250 0.870056 2.17514 uncultured Methanobacterium sp. 176306 Archaea Archaea 73.9 3.9e-13   NR WP_321423214.1 176306 g8876 i0 78.4 0.444 37 8 44.4 0 24 134 434 470 WP_321423214.1 hypothetical protein [uncultured Methanobacterium sp.] diamond 111 73.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium uncultured Methanobacterium sp.
27840159 27840159 PRJNA688655_P_NODE_9444_length_249_cov_0.875000_g9379_i0 PRJNA688655 9444 249 0.875 2.17875 Methanobrevibacter sp. 66852 Archaea Archaea 147 7.62e-41   NR WP_292788622.1 66852 g9379 i0 90.4 2 83 8 100 0 249 1 223 305 WP_292788622.1 ATP-grasp domain-containing protein, partial [Methanobrevibacter sp.] diamond 498 147 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27935166 27935166 PRJNA688655_P_NODE_9285_length_249_cov_0.875000_g9220_i0 PRJNA688655 9285 249 0.875 2.17875 Methanobacterium sp. PtaU1.Bin 2164 Archaea Archaea 168 7.44e-51   NR OPY19753.1 1811675 g9220 i0 100 0.987951807228916 82 0 98.8 0 247 2 64 145 OPY19753.1 MAG: Ribonuclease HII [Methanobacterium sp. PtaU1.Bin097] diamond 246 168 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin097
28693046 28693046 PRJNA688655_P_NODE_16667_length_241_cov_0.916667_g16602_i0 PRJNA688655 16667 241 0.916667 2.20916747 Methanobacterium sp. PtaU1.Bin 2164 Archaea Archaea 160 2.31e-49   NR OPY21925.1 1811675 g16602 i0 100 0.995850622406639 80 0 99.6 0 1 240 17 96 OPY21925.1 MAG: hypothetical protein A4E26_01473 [Methanobacterium sp. PtaU1.Bin097] diamond 240 160 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin097
28693053 28693053 PRJNA688655_P_NODE_9267_length_249_cov_0.875000_g9202_i0 PRJNA688655 9267 249 0.875 2.17875 Methanobacterium sp. 2164 Archaea Archaea 160 1.57e-44   NR WP_292754733.1 2164 g9202 i0 90.4 1 83 8 100 0 1 249 400 482 WP_292754733.1 glycosyltransferase [Methanobacterium sp.] diamond 249 160 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29198205 29198205 PRJNA688655_P_NODE_16389_length_241_cov_0.916667_g16324_i0 PRJNA688655 16389 241 0.916667 2.20916747 Methanobacterium sp. 2164 Archaea Archaea 118 2.4799999999999996e-31   NR MDO5835457.1 2164 g16324 i0 100 0.684647302904564 55 0 68.5 0 239 75 141 195 MDO5835457.1 transglutaminase family protein [Methanobacterium sp.] diamond 165 118 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29924397 29924397 PRJNA688655_P_NODE_15391_length_242_cov_0.911243_g15326_i0 PRJNA688655 15391 242 0.911243 2.20520806 Methanobacterium sp. 2164 Archaea Archaea 162 4.84e-49   NR MDO5834996.1 2164 g15326 i0 100 0.91735537190082606 74 0 91.7 0 242 21 111 184 MDO5834996.1 M48 family metallopeptidase [Methanobacterium sp.] diamond 222 162 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
30587620 30587620 PRJNA688655_P_NODE_10253_length_248_cov_0.880000_g10188_i0 PRJNA688655 10253 248 0.88 2.1824 Methanobacterium petrolearium 710190 Archaea Archaea 161 6.06e-46   NR WP_209627165.1 710190 g10188 i0 98.8 2.9758064516129 82 1 99.2 0 1 246 11 92 WP_209627165.1 adenosylhomocysteinase [Methanobacterium petrolearium] diamond 738 161 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium
30662520 30662520 PRJNA688655_P_NODE_8733_length_250_cov_0.870056_g8668_i0 PRJNA688655 8733 250 0.870056 2.17514 Methanobrevibacter 2172 Archaea Archaea 99 7.13e-24   NR WP_019265609.1 2173 g8668 i0 67.1 1.728 70 23 84 0 34 243 2 71 WP_019265609.1 hypothetical protein [Methanobrevibacter smithii] diamond 432 99 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;