RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA688414" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA688414 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28471945 28471945 PRJNA688414_P_NODE_8326_length_242_cov_0.923077_g8292_i0 PRJNA688414 8326 242 0.923077 2.23384634 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 51.2 3.76e-5   NR XP_004037361.1 5932 g8292 i0 45.9 0.756198347107438 61 27 73.1 2 1 177 106 162 XP_004037361.1 hypothetical protein IMG5_055180 [Ichthyophthirius multifiliis] diamond 183 51.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
29829457 29829457 PRJNA688414_P_NODE_7771_length_245_cov_0.877907_g7737_i0 PRJNA688414 7771 245 0.877907 2.15087215 Polarella glacialis 89957 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0131   NR CAK0854905.1 89957 g7737 i0 44.2 0.52653061224489806 43 22 52.7 1 31 159 38 78 CAK0854905.1 unnamed protein product [Polarella glacialis] diamond 129 42.7 1 Eukaryota Sar     Dinophyceae Suessiales Suessiaceae Polarella Polarella glacialis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;