RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA688352" and tax_phylum = "Calditrichota"

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tax_superkingdom 1

tax_phylum 1

  • Calditrichota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688352 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16479548 16479548 PRJNA688352_P_NODE_11693_length_242_cov_0.911243_g11590_i0 PRJNA688352 11693 242 0.911243 2.20520806 Caldithrix abyssi 187145 Bacteria Bacteria 147 1.25e-39   NR HHJ53551.1 187145 g11590 i0 95 4.93388429752066 80 4 99.2 0 3 242 347 426 HHJ53551.1 excinuclease ABC subunit UvrB [Caldithrix abyssi] diamond 1194 147 1 Bacteria   Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi
26955526 26955526 PRJNA688352_P_NODE_10642_length_244_cov_0.900585_g10539_i0 PRJNA688352 10642 244 0.900585 2.1974274 Calditrichia bacterium 2268178 Bacteria Bacteria 104 3.85e-24   NR MCK6622506.1 2268178 g10539 i0 59.5 0.971311475409836 79 32 97.1 0 243 7 284 362 MCK6622506.1 TolC family protein [Calditrichia bacterium] diamond 237 104 1 Bacteria   Pseudomonadati Calditrichota Calditrichia       Calditrichia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;