RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA688352" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 5 ✖

bioproject 1

  • PRJNA688352 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13420804 13420804 PRJNA688352_P_NODE_11031_length_243_cov_0.905882_g10928_i0 PRJNA688352 11031 243 0.905882 2.20129326 Methanosphaera sp. 2666342 Archaea Archaea 164 1.32e-47   NR HIJ14882.1 2666342 g10928 i0 97.5 4 81 2 100 0 1 243 64 144 HIJ14882.1 amidohydrolase family protein [Methanosphaera sp.] diamond 972 164 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
28345491 28345491 PRJNA688352_P_NODE_11606_length_242_cov_0.911243_g11503_i0 PRJNA688352 11606 242 0.911243 2.20520806 Methanobrevibacter sp. 66852 Archaea Archaea 140 1.4499999999999998e-37   NR WP_292749016.1 66852 g11503 i0 85 1.98347107438017 80 12 99.2 0 3 242 39 118 WP_292749016.1 AAA family ATPase [Methanobrevibacter sp.] diamond 480 140 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28345494 28345494 PRJNA688352_P_NODE_8666_length_248_cov_0.880000_g8563_i0 PRJNA688352 8666 248 0.88 2.1824 Methanobacterium sp. 2164 Archaea Archaea 64.3 1.49e-11   NR MDO5835554.1 2164 g8563 i0 100 0.350806451612903 29 0 35.1 0 246 160 37 65 MDO5835554.1 helix-turn-helix transcriptional regulator [Methanobacterium sp.] diamond 87 64.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
32232232 32232232 PRJNA688352_P_NODE_7958_length_250_cov_0.870056_g7855_i0 PRJNA688352 7958 250 0.870056 2.17514 Methanobrevibacter sp. 66852 Archaea Archaea 79.7 1.34e-15   NR MBO7241782.1 66852 g7855 i0 48.1 0.948 79 39 94.8 1 239 3 41 117 MBO7241782.1 hypothetical protein [Methanobrevibacter sp.] diamond 237 79.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32358809 32358809 PRJNA688352_P_NODE_11679_length_242_cov_0.911243_g11576_i0 PRJNA688352 11679 242 0.911243 2.20520806 Methanobrevibacter sp. 66852 Archaea Archaea 158 7.669999999999999e-45   NR WP_292788201.1 66852 g11576 i0 97.5 1.98347107438017 80 2 99.2 0 3 242 66 145 WP_292788201.1 NAD(P)/FAD-dependent oxidoreductase [Methanobrevibacter sp.] diamond 480 158 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;