RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA688157" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA688157 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25403211 25403211 PRJNA688157_S_NODE_42880_length_318_cov_1.559184_g42738_i0 PRJNA688157 42880 318 1.559184 4.95820512 root 1 Root_unresolved Root_unresolved 134 2.83e-36   NR WP_270022569.1 287 g42738 i0 66 424.603773584906 97 33 91.5 0 1 291 88 184 WP_270022569.1 hypothetical protein [Pseudomonas aeruginosa] diamond 135024 135 0.992592592592593 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa
30567400 30567400 PRJNA688157_S_NODE_29673_length_352_cov_2.433692_g29531_i0 PRJNA688157 29673 352 2.433692 8.56659584 root 1 Root_unresolved Root_unresolved 181 3.3499999999999995e-55   NR WP_163883712.1 1076926 g29531 i0 72.4 308.446022727273 116 32 98.9 0 4 351 7 122 WP_163883712.1 hypothetical protein, partial [Rhizobium laguerreae] diamond 108573 181 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium laguerreae
32465182 32465182 PRJNA688157_S_NODE_98679_length_233_cov_2.393750_g98537_i0 PRJNA688157 98679 233 2.39375 5.5774375 root 1 Root_unresolved Root_unresolved 122 7.389999999999999e-32   NR WP_270022569.1 287 g98537 i0 76.4 418.094420600858 72 17 92.7 0 2 217 27 98 WP_270022569.1 hypothetical protein [Pseudomonas aeruginosa] diamond 97416 123 0.991869918699187 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa
32894676 32894676 PRJNA688157_S_NODE_10160_length_453_cov_2.678947_g10018_i0 PRJNA688157 10160 453 2.678947 12.13562991 Sulfitobacter sp. 1903071 Bacteria Bacteria 44.7 0.0316   NR MEH6831101.1 1903071 g10018 i0 46.2 0.258278145695364 39 20 25.2 1 160 273 36 74 MEH6831101.1 GNAT family N-acetyltransferase [Sulfitobacter sp.] diamond 117 44.7 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;