RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA685607" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA685607 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21068736 21068736 PRJNA685607_P_NODE_39537_length_301_cov_1.482456_g39178_i0 PRJNA685607 39537 301 1.482456 4.46219256 Opisthokonta 33154 Platyhelminthes Platyhelminthes 150 2.48e-40   NR XP_024352983.1 6210 g39178 i0 66.3 117.498338870432 98 33 97.7 0 6 299 98 195 XP_024352983.1 Tubulin beta-4 chain [Echinococcus granulosus] diamond 35367 151 0.993377483443709 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
27082226 27082226 PRJNA685607_P_NODE_82782_length_245_cov_0.895349_g82423_i0 PRJNA685607 82782 245 0.895349 2.19360505 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 87 9.81e-18   NR PAA65947.1 282301 g82423 i0 57 5.80408163265306 79 34 96.7 0 8 244 116 194 PAA65947.1 hypothetical protein BOX15_Mlig027053g1 [Macrostomum lignano] diamond 1422 87 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
27840112 27840112 PRJNA685607_P_NODE_19924_length_377_cov_1.013158_g19566_i0 PRJNA685607 19924 377 1.013158 3.81960566 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 74.3 1.44e-12   NR VZI19819.1 99802 g19566 i0 32.2 0.915119363395225 115 73 91.5 2 27 371 458 567 VZI19819.1 unnamed protein product [Spirometra erinaceieuropaei] diamond 345 74.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
28408707 28408707 PRJNA685607_P_NODE_49886_length_278_cov_1.575610_g49527_i0 PRJNA685607 49886 278 1.57561 4.3801958 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 50.4 1.07e-4   NR PAA86220.1 282301 g49527 i0 26.1 0.992805755395683 92 67 98.2 1 275 3 93 184 PAA86220.1 hypothetical protein BOX15_Mlig009159g3 [Macrostomum lignano] diamond 276 50.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
28578148 28578148 PRJNA685607_P_NODE_14247_length_427_cov_1.087571_g13889_i0 PRJNA685607 14247 427 1.087571 4.64392817 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 127 1.38e-34   NR PAA50006.1 282301 g13889 i0 54.9 5.66978922716628 113 44 79.4 2 341 3 21 126 PAA50006.1 hypothetical protein BOX15_Mlig008195g3 [Macrostomum lignano] diamond 2421 128 0.9921875 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
30725644 30725644 PRJNA685607_P_NODE_63714_length_253_cov_1.250000_g63355_i0 PRJNA685607 63714 253 1.25 3.1625 Platyhelminthes 6157 Platyhelminthes Platyhelminthes 44.3 0.00236   NR VUZ41517.1 6216 g63355 i0 34.3 1.67193675889328 70 44 80.6 1 50 253 1 70 VUZ41517.1 unnamed protein product [Hymenolepis diminuta] diamond 423 44.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Hymenolepididae Hymenolepis Hymenolepis diminuta
31673951 31673951 PRJNA685607_P_NODE_7637_length_557_cov_1.673554_g7283_i0 PRJNA685607 7637 557 1.673554 9.32169578 root 1 Root_unresolved Root_unresolved 210 2.31e-64   NR VDD81745.1 53468 g7283 i0 59.7 4.89587073608618 181 62 96.4 2 538 2 1 172 VDD81745.1 unnamed protein product, partial [Mesocestoides corti] diamond 2727 210 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Mesocestoididae Mesocestoides Mesocestoides corti
32528518 32528518 PRJNA685607_P_NODE_34399_length_316_cov_1.020576_g34040_i0 PRJNA685607 34399 316 1.020576 3.22502016 Metazoa 33208 Platyhelminthes Platyhelminthes 101 3.649999999999999e-23   NR KAF7259454.1 59628 g34040 i0 48.6 5.07911392405063 107 50 99.7 4 2 316 130 233 KAF7259454.1 hypothetical protein EG68_03048 [Paragonimus skrjabini miyazakii] diamond 1605 101 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus skrjabini miyazakii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;