RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA685607" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA685607 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31187740 31187740 PRJNA685607_P_NODE_97295_length_238_cov_3.181818_g96936_i0 PRJNA685607 97295 238 3.181818 7.57272684 Fibrobacteres bacterium CG2_3 1805149 Bacteria Bacteria 90.9 4.23e-22   NR OIP53088.1 1805149 g96936 i0 73 0.794117647058823 63 17 79.4 0 235 47 1 63 OIP53088.1 MAG: transcriptional regulator [Fibrobacteres bacterium CG2_30_45_31] diamond 189 90.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacteres bacterium CG2_30_45_31
32516965 32516965 PRJNA685607_P_NODE_84539_length_245_cov_0.895349_g84180_i0 PRJNA685607 84539 245 0.895349 2.19360505 Fibrobacterales bacterium 2478481 Bacteria Bacteria 67.8 5.6e-11   NR MBP5350437.1 2478481 g84180 i0 61.1 0.661224489795918 54 18 62.4 1 76 228 3 56 MBP5350437.1 DUF285 domain-containing protein [Fibrobacterales bacterium] diamond 162 67.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales     Fibrobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;