RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA685060" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA685060 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9594794 9594794 PRJNA685060_P_NODE_4488_length_458_cov_2.031169_g4398_i0 PRJNA685060 4488 458 2.031169 9.30275402 archaeon 1906665 Archaea Archaea 229 6.449999999999999e-72   NR RYG67981.1 1906665 g4398 i0 74.7 1.96506550218341 150 38 98.3 0 7 456 79 228 RYG67981.1 MAG: malate dehydrogenase [archaeon] diamond 900 229 1 Archaea               archaeon
32275362 32275362 PRJNA685060_P_NODE_11798_length_272_cov_1.105528_g11708_i0 PRJNA685060 11798 272 1.105528 3.00703616 root 1 Root_unresolved Root_unresolved 60.5 3.19e-8   NR AIF23262.1 1456558 g11708 i0 40.3 4.33455882352941 77 44 82.7 2 225 1 1950 2026 AIF23262.1 RCC1 domain-containing protein [uncultured marine group II/III euryarchaeote SAT1000_14_B08] diamond 1179 60.5 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote SAT1000_14_B08

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;