RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA685060" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA685060 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1942179 1942179 PRJNA685060_P_NODE_5102_length_426_cov_4.110482_g5012_i0 PRJNA685060 5102 426 4.110482 17.51065332 Scenedesmus 3087 Plants Plants 197 3.6399999999999995e-57   NR KAF6258034.1 2650976 g5012 i0 74.8 21.8169014084507 131 33 92.3 0 424 32 374 504 KAF6258034.1 ATP synthase beta chain mitochondrial precursor [Scenedesmus sp. NREL 46B-D3] diamond 9294 198 0.994949494949495 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
27714436 27714436 PRJNA685060_P_NODE_5144_length_424_cov_3.415954_g5054_i0 PRJNA685060 5144 424 3.415954 14.48364496 Trebouxia sp. C 2796353 Plants Plants 179 1.2899999999999997e-54   NR KAL0041041.1 2905653 g5054 i0 71.9 1.90330188679245 135 34 94.8 3 403 2 1 132 KAL0041041.1 hypothetical protein WJX77_002990 [Trebouxia sp. C0004] diamond 807 179 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;